Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N22
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04620.1 68415.m00470 cation efflux family protein potential ... 33 0.11
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str... 32 0.34
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 31 0.46
At1g32400.2 68414.m03998 senescence-associated family protein co... 31 0.60
At1g32400.1 68414.m03997 senescence-associated family protein co... 31 0.60
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 30 1.4
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 29 2.4
At3g13960.1 68416.m01762 expressed protein identical to transcri... 28 4.2
At5g47920.1 68418.m05919 expressed protein similar to unknown pr... 28 5.6
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 27 7.4
At2g20100.1 68415.m02348 ethylene-responsive family protein simi... 27 7.4
At5g17160.1 68418.m02010 expressed protein 27 9.8
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 27 9.8
At1g03270.1 68414.m00305 expressed protein contains Pfam profile... 27 9.8
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/72 (23%), Positives = 32/72 (44%)
Frame = -3
Query: 465 HADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYS 286
H H+ D+ E + DHH H+ H+ ++C +H S +E +H H
Sbjct: 577 HKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEEC-NHNHDHEHQSHSHNHEECNHNHDH 635
Query: 285 PDDYEDPRTDSK 250
D++ +++ K
Sbjct: 636 HSDHQPEKSEKK 647
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -3
Query: 411 EDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYS-PDDYEDPRTDSKMGLQ* 235
++ +HH H+D H+ + + H + +++ E DH H+S +E+ + Q
Sbjct: 566 KNEEHHQHSDSHKHE----EHHQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQ- 620
Query: 234 VFDHGPVHQE-RYSNPH*QQAEERDDQVEEE*HIFH 130
H H+E +++ H + + +E HI H
Sbjct: 621 --SHSHNHEECNHNHDHHSDHQPEKSEKKEHRHIDH 654
>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
similarity to PRLI-interacting factor L GI:11139268 from
[Arabidopsis thaliana]; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 448
Score = 31.9 bits (69), Expect = 0.34
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 426 AVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHE-HYSPDDYEDPRTDS 253
+V EEE D H+D H DC DH + E +HE H+S D DP S
Sbjct: 305 SVNEEEKEDREGHDDHHHGHDC--HDH------HNEHEHEHEHEHHHSHDHTHDPGVGS 355
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = -3
Query: 426 AVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRTDS 253
+V E++ DHH H+ DH DH DH H+S D DP S
Sbjct: 302 SVNEDDKGDHHDHDHDHHHDHNHDHDH--------HHHDGHDHHHHSHDHTHDPGVSS 351
>At1g32400.2 68414.m03998 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 265 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 363
++FI +G +FVI+ GC G S C + Y+
Sbjct: 83 YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYS 115
>At1g32400.1 68414.m03997 senescence-associated family protein
contains Pfam profile PF00335: Tetraspanin family
Length = 280
Score = 31.1 bits (67), Expect = 0.60
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 265 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 363
++FI +G +FVI+ GC G S C + Y+
Sbjct: 83 YLFIGIGVALFVISCCGCVGTCSRSVCCLSCYS 115
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 343 SDSRVSLHSIPRTRSRTLQPRRL 275
S S V + S+PRTRS + PRRL
Sbjct: 78 SSSTVDISSMPRTRSSRMSPRRL 100
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -3
Query: 462 ADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSP 283
AD +H A+ ++ AD +L N+ +K R+ V ++ S+ DHE P
Sbjct: 938 ADLVHQVKAQTSAM-KKLSADENLKNEHSMKKQETRNSTIVLEDMDTSDSEASDHEREDP 996
Query: 282 D 280
D
Sbjct: 997 D 997
>At3g13960.1 68416.m01762 expressed protein identical to
transcription activator GRL5 [Arabidopsis thaliana]
GI:21539888 (unpublished); supporting cDNA
gi|21539887|gb|AY102638.1|
Length = 397
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Frame = -3
Query: 465 HADAIHNALLDALAVGEEEDADHHLHND-DHQQKDC-VRDDHAVTLAYRSTASQERDHEH 292
H HN + D + HLH+D DH+Q+ C V RS + +
Sbjct: 291 HCSTDHNKI-DHHHTYSSSSSSQHLHHDHDHRQQQCFVLGADMFNKPTRSVLANSSRQDQ 349
Query: 291 YSPDDYEDPRTDSKMGLQ*VF 229
+D +D SK L F
Sbjct: 350 NQEEDEKDSSESSKKSLHHFF 370
>At5g47920.1 68418.m05919 expressed protein similar to unknown
protein (emb|CAB67623.1)
Length = 187
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = -3
Query: 399 HHL--HNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPR 262
HHL H D D +D + + Y S AS HE Y + E +
Sbjct: 58 HHLLGHADQDDDNDQDQDKNKAIVLYNSKASTMAHHEEYDVHEEESDK 105
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = -3
Query: 423 VGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDYEDPRTDSK 250
+ ++E+ N+D Q D + DD ++ S+E D DD D D +
Sbjct: 20 ISDQENLKAESDNEDDQLPDGIEDDEVDSMEDDEGESEEDDEGDTEEDDEGDSEEDDE 77
>At2g20100.1 68415.m02348 ethylene-responsive family protein similar
to Ethylene-regulated ER33 protein (GI:5669656)
[Lycopersicon esculentum]; PMID: 12679534; putative
bHLH133 transcription factor
Length = 362
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -3
Query: 456 AIHNALLDALAVGEEEDAD---HHLHNDDHQQKDCVRDDHAVTLAYRSTASQERD 301
++ LL L +GEEE + HH H + HQ R + R AS +++
Sbjct: 94 SLSQLLLGGLMMGEEEKMEMMNHHHHQNQHQSYQAKRIQNWEEQVLRHQASMKQE 148
>At5g17160.1 68418.m02010 expressed protein
Length = 569
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 411 EDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHE 295
E A HNDD++ K+ + D +V A QE D E
Sbjct: 311 ESAITETHNDDNESKNVLAIDRSVDQQETEHAIQENDAE 349
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 27.1 bits (57), Expect = 9.8
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = -3
Query: 330 YRSTASQERDHEHYSPDDYEDPRTDSK 250
+ A +++++E+Y P D ++P++D K
Sbjct: 83 FSDEAPKKKNYENYFPKDKQEPKSDQK 109
>At1g03270.1 68414.m00305 expressed protein contains Pfam profile
PF01595: Domain of unknown function
Length = 499
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 262 PWIFIVVGAVMFVIAFLG 315
PW F+VVG F++ F G
Sbjct: 31 PWWFVVVGVACFLVLFAG 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,958,008
Number of Sequences: 28952
Number of extensions: 238442
Number of successful extensions: 838
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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