Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N21
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54754| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   1e-19
SB_53146| Best HMM Match : UPF0099 (HMM E-Value=3.8e-10)               78   9e-15
SB_54159| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_38426| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              29   4.1  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   7.2  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               28   9.5  
SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)                   28   9.5  

>SB_54754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 54/137 (39%), Positives = 87/137 (63%), Gaps = 3/137 (2%)
 Frame = +3

Query: 252 MKMFSNASETVKKFVSNEEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALK-KDPEG 428
           +KM+    ++   F  ++ YK+  VV ++L+MG GK+AAQ  HAAVG +   L+ +D  G
Sbjct: 78  VKMYPETEDSEAGF--SDPYKMAFVVNSELNMGVGKVAAQVGHAAVGLYRALLQDQDDLG 135

Query: 429 --LKAWQMTGQAKVALKIDSLEEIKKIADNAKKMGLITSLIRDAGRTQIAPNSITVLGVG 602
             L +W+ +G  KV LK ++   +  +   AK++ L   L++DAGRTQIA  S+TVLG+ 
Sbjct: 136 HMLMSWEDSGGMKVVLKGENTAHLLDMETQAKRLQLPFYLVQDAGRTQIASGSVTVLGIF 195

Query: 603 PAPKDIIDKVTGHLKLL 653
            A ++ ++K+TG L+LL
Sbjct: 196 GATEE-VNKITGKLRLL 211


>SB_53146| Best HMM Match : UPF0099 (HMM E-Value=3.8e-10)
          Length = 250

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 34/65 (52%), Positives = 44/65 (67%)
 Frame = +3

Query: 279 TVKKFVSNEEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQA 458
           T      + EYK++LVVR DL MGKGK+AAQCCHAAVG   + LK +P+ L+ W+   Q 
Sbjct: 58  TTYTMAGSGEYKMILVVRQDLGMGKGKVAAQCCHAAVGLCRQLLKNNPKVLRMWENAAQP 117

Query: 459 KVALK 473
           KV +K
Sbjct: 118 KVVVK 122


>SB_54159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = +3

Query: 132 CLLKTLKISPKHKMTFDMSFYTGLSCGICIGLSIFAIRKYMKMFSNASETVKKFVSNEEY 311
           C+L  + ++ K ++ F+ S +  L C     + + AI   + +   A     K+ S++E 
Sbjct: 66  CVLVKVSVTVKCEIFFNRSPFLDLQCPETTTIQVTAILSELIIHIRAHSRTDKYASHKEN 125

Query: 312 KLVLVVRTDLSMGKGK 359
           K   + R++L + KGK
Sbjct: 126 KHQKLGRSNLRLTKGK 141


>SB_38426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = +3

Query: 132 CLLKTLKISPKHKMTFDMSFYTGLSCGICIGLSIFAIRKYMKMFSNASETVKKFVSNEEY 311
           C+L  + ++ K ++ F+ S +  L C     + + AI   + +   A     K+ S++E 
Sbjct: 149 CVLVKVSVTVKCEIFFNRSPFLDLQCPETTTIQVTAILSELIIHIRAHSRTDKYASHKEN 208

Query: 312 KLVLVVRTDLSMGKGK 359
           K   + R++L + KGK
Sbjct: 209 KHQKLGRSNLRLTKGK 224


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 581  NNSFGCRTSTERHYRQSHRSP*VAVIICFQNW 676
            + S GC +  ERH+++ H  P V +      W
Sbjct: 1271 DQSIGCNSQEERHHQRRHHKPEVILEYSLNQW 1302


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 566  DCTKFNNSFGCRTSTERHYRQ 628
            DC  F+  FGCR  +E H  Q
Sbjct: 952  DCMNFDGGFGCRPGSESHAGQ 972


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 141  KTLKISPKHKMTFDMSFYTGLSCGICIGLSIFAIRKYMKMFS 266
            KTL   PK  + F++ F+T  + G+  G    + +++ +MF+
Sbjct: 1634 KTLTFKPKFDIPFELPFFTPTASGVIAGSYERSGQEFEEMFT 1675


>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
          Length = 233

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 483 LEEIKKIADNAKKMGLITSLIRDAGRTQIAPNSITVLGVGPAPKDIIDKV 632
           L E+KK+    + + + T  + D     + P  + +LG  PA K  +D V
Sbjct: 91  LMELKKLGTEVELVDVGTETLPDGSTLPLPPVLLGILGSNPAKKTPVDYV 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,907,455
Number of Sequences: 59808
Number of extensions: 395663
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)