Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N16
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.50 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.6  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   8.1  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 229 SRIEATRLVVPLACLYQPLKERPDLPPIQYEP 324
           SR+ A +  + L   YQPL+  P  PP  + P
Sbjct: 185 SRLAAFKRTIALGAFYQPLQPFP--PPYPFYP 214


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/53 (20%), Positives = 24/53 (45%)
 Frame = -1

Query: 365 GFNIALHVFRVQSTGSYCIGGRSGRSLSGWYKQAKGTTSLVASILLDGHTFQV 207
           G+ +   ++++Q  GS  +   + RSL G       T   +  ++   H F++
Sbjct: 609 GYGLGAELYQIQEDGSRGVIAFASRSLRGPELNYTTTEKELLGVIFALHKFRI 661


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 448 AISEQHQPAELIPNF 492
           A+++QH PA+L  +F
Sbjct: 116 AVAQQHSPADLENHF 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,620
Number of Sequences: 336
Number of extensions: 3521
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)