Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N16
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14661| Best HMM Match : EMI (HMM E-Value=0.8)                       30   1.3  
SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)                     29   3.9  
SB_12845| Best HMM Match : Collagen (HMM E-Value=6.2)                  29   3.9  
SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)                   27   8.9  
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_14661| Best HMM Match : EMI (HMM E-Value=0.8)
          Length = 143

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 265 ACL--YQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDY--RAKLWVCNFCFQRNPF 432
           ACL  Y   +++P  PP +   +L   + C  +LNP C   +  R+ L +C   F  N  
Sbjct: 40  ACLKGYLQFQDQPSPPPRKQYQILQGPHVCGGLLNPSCCPGWQQRSSLGLCVVHFMDNYS 99

Query: 433 PPQ 441
            P+
Sbjct: 100 DPK 102


>SB_57270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 427

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = +1

Query: 310 IQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPN 489
           +Q+ P     + C    +P         +    +  Q +P+  Q++  + QH P    P 
Sbjct: 113 VQHSPYTVQHSPCTVQHSPYTVQHSPYTVQHSPYAVQHSPYTVQHSPYTVQHSPYTAQPI 172

Query: 490 FSTIEYTITRAQAMPPIY 543
           +ST ++  + AQ   PIY
Sbjct: 173 YSTAQFIYSTAQ---PIY 187


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 139  LIGDMATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKE 291
            ++ D+AT EE  +  E RDG  F ++++     +    +  LA L  PL++
Sbjct: 3296 MVADIATEEEACKDQETRDGDEFDFDLYNEGTDQEVANLCRLAELRSPLQQ 3346


>SB_24296| Best HMM Match : Pox_A32 (HMM E-Value=1)
          Length = 1041

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +1

Query: 178 QNEDRDGIRFTWNVWPSSRIEATR-----LVVPLACLYQPLKER--PDLPPIQYEPV 327
           +N+D  G+ F+W   P   +  TR     L+VP+  L    +ER  P   PI   P+
Sbjct: 549 RNDDHGGVHFSWFAPPKGVVVGTRGGRGVLLVPMIALDSTNQERGSPSYFPIALSPL 605


>SB_12845| Best HMM Match : Collagen (HMM E-Value=6.2)
          Length = 183

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 582 KFFLX*TSINNKQVDWGHSLCSRYCVLYGGKVRNQF 475
           K+ L   S   K   WG SLC +Y  L+G  +R ++
Sbjct: 142 KYGLWGASFRGKYGLWGASLCGKYKGLWGASLRGKY 177


>SB_38248| Best HMM Match : 7tm_1 (HMM E-Value=1e-06)
          Length = 374

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 333 TEYRLVLYRW*VGALLKRLVQASQRHNKPRSLNST*WPYVPSEPYA 196
           T  RLV   W +GA+L  ++  S   +   S+ ST W Y  S  +A
Sbjct: 207 TTKRLVKAAWVMGAILTIIIPGSTTKDCSTSVMSTLWYYKDSYMFA 252


>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -3

Query: 363 VQYSSACISCTEYRLVLYRW*-VGALLKRLVQASQRHNKPR----SLNST*WPYVPSEPY 199
           V+Y+ A  +        +RW   G   K  +Q S R    R    SLN T  P +P EP+
Sbjct: 681 VKYTVAIATKHRLAYTRFRWLGFGGYAKLRIQRSNRDRTIRFGLNSLNETHLPIIPHEPF 740

Query: 198 AIAVFILL 175
               F  L
Sbjct: 741 TSGHFFTL 748


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,819,133
Number of Sequences: 59808
Number of extensions: 426578
Number of successful extensions: 1030
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)