Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N16
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical ...   211   3e-55
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    31   0.84 
AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.      27   7.9  
AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast m...    27   7.9  
AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast m...    27   7.9  

>AL132858-2|CAB60476.2|  821|Caenorhabditis elegans Hypothetical
           protein Y113G7A.3 protein.
          Length = 821

 Score =  211 bits (515), Expect = 3e-55
 Identities = 87/155 (56%), Positives = 119/155 (76%), Gaps = 4/155 (2%)
 Frame = +1

Query: 151 MATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDL----PPIQY 318
           MAT+EE++   +  DG++FTWN+WP SR+++ +LVVPL C + PLKERP      PP++Y
Sbjct: 1   MATWEEYLGAQQANDGVQFTWNMWPHSRVDSQKLVVPLTCFFTPLKERPSTEVAQPPLEY 60

Query: 319 EPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFST 498
           +PVLC + +C+AILNP+C VDYRAK+W+C FC  RNPFP  YAAI+E ++P EL P F+T
Sbjct: 61  DPVLCQKASCKAILNPLCAVDYRAKIWMCPFCNNRNPFPAHYAAIAEDNRPPELYPQFTT 120

Query: 499 IEYTITRAQAMPPIYLLVVDTCLXEEELGALKDSL 603
           IEYT+ +A  MPPI++ VVDTC+  EEL +LK+ L
Sbjct: 121 IEYTLRKATTMPPIFVFVVDTCMTAEELKSLKECL 155


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +1

Query: 256 VPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQV-DYRAKLWVCNFCFQRNPF 432
           +P A    P ++  +L  IQ   ++  R  CR  +NP   + D+R   W CN C + N  
Sbjct: 307 LPFAITLHPFRDVKNLNIIQTSNIVRCRY-CRTYINPYVYLPDHRH--WKCNLCNRNNDL 363

Query: 433 PPQY 444
           P  +
Sbjct: 364 PDDF 367


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/81 (25%), Positives = 35/81 (43%)
 Frame = +1

Query: 208 TWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDYR 387
           T ++  +S+I    ++ P A L +  KE P +      P+ C R  C+A + P  +    
Sbjct: 416 TNDILKASQIPLAVVISPFASLTEYEKEPPVVDLGPQGPIRCQR--CKAYICPFMEFQDG 473

Query: 388 AKLWVCNFCFQRNPFPPQYAA 450
            + + C FC  R      Y A
Sbjct: 474 GRSFRCPFCHARTSVEDAYFA 494


>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +2

Query: 152 WPHTRSSSSRMKTAMAYGSLGTYGHQVEXXXXXXXXXXXACTNRLRSAPTYHRYSTSLYS 331
           WP  R+   R    MAY +LG +  QV            AC   L SA  +     + + 
Sbjct: 101 WPKYRTHCRRPYPEMAYRALGNWARQVVAVCLVVSQFLIACVLLLISAENFTNLLNTFFH 160

Query: 332 VH 337
           +H
Sbjct: 161 LH 162


>AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 398 GSATFASNETHFHLNMLLYQNSINPQN*F 484
           GSA       HF LN +LYQ ++ P + F
Sbjct: 14  GSAQLVKEFFHFGLNSILYQRALYPSDSF 42


>AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform b
           protein.
          Length = 116

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 398 GSATFASNETHFHLNMLLYQNSINPQN*F 484
           GSA       HF LN +LYQ ++ P + F
Sbjct: 14  GSAQLVKEFFHFGLNSILYQRALYPSDSF 42


>AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform a
           protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 398 GSATFASNETHFHLNMLLYQNSINPQN*F 484
           GSA       HF LN +LYQ ++ P + F
Sbjct: 14  GSAQLVKEFFHFGLNSILYQRALYPSDSF 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,904
Number of Sequences: 27780
Number of extensions: 315673
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)