Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N16
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23660.1 68416.m02975 transport protein, putative similar to ... 155 2e-38
At4g14160.3 68417.m02185 transport protein, putative similar to ... 144 5e-35
At4g14160.2 68417.m02186 transport protein, putative similar to ... 144 5e-35
At4g14160.1 68417.m02184 transport protein, putative similar to ... 144 5e-35
At1g05520.1 68414.m00565 transport protein, putative similar to ... 142 2e-34
At5g43670.1 68418.m05337 transport protein, putative similar to ... 124 6e-29
At2g21630.1 68415.m02573 transport protein, putative similar to ... 122 2e-28
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 48 4e-06
At4g32640.1 68417.m04646 sec23/sec24 transport protein-related 39 0.002
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 36 0.021
At5g51640.1 68418.m06403 leaf senescence protein-related (YLS7 )... 33 0.19
At4g01810.1 68417.m00238 protein transport protein-related relat... 32 0.26
At1g77405.1 68414.m09014 pentatricopeptide (PPR) repeat-containi... 32 0.26
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 29 1.8
At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r... 29 3.2
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r... 29 3.2
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 28 4.2
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 4.2
At5g62330.1 68418.m07824 expressed protein 28 5.5
At4g04750.1 68417.m00697 sugar transporter family protein simila... 27 7.3
At3g06650.1 68416.m00774 ATP-citrate synthase, putative / ATP-ci... 27 7.3
At5g49460.1 68418.m06119 ATP-citrate synthase, putative / ATP-ci... 27 9.6
At3g56530.1 68416.m06286 no apical meristem (NAM) protein-relate... 27 9.6
At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi... 27 9.6
>At3g23660.1 68416.m02975 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 765
Score = 155 bits (376), Expect = 2e-38
Identities = 69/146 (47%), Positives = 93/146 (63%), Gaps = 6/146 (4%)
Frame = +1
Query: 184 EDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILN 363
E DG+R TWNVWP S+ EA++ V+PLA P++ D+P + Y P+ C TC A LN
Sbjct: 10 EGIDGVRMTWNVWPHSKAEASKCVIPLAACISPIRRHADIPTLPYAPLRC--RTCSAALN 67
Query: 364 PMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYTITRAQAM---- 531
QVD+ AKLW+C FC+QRN FPP Y ISE + P EL P ++T+EYT+ A
Sbjct: 68 AYAQVDFTAKLWICPFCYQRNHFPPHYHVISETNLPGELYPQYTTVEYTLPPPVANGEGL 127
Query: 532 --PPIYLLVVDTCLXEEELGALKDSL 603
PP+++ V+DTC+ EEEL K +L
Sbjct: 128 VDPPVFVFVLDTCMIEEELDFAKSAL 153
>At4g14160.3 68417.m02185 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 620
Score = 144 bits (348), Expect = 5e-35
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Frame = +1
Query: 142 IGDMATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYE 321
+ D A EE E DG+R TWN+WP +++EA++ V+PLA P++ P + + Y
Sbjct: 4 MADKAKVEEM--DWEGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPYA 61
Query: 322 PVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTI 501
P+ C TC+A+LN +VD+ A WVC FC+ RN FP Y +ISE + P EL P ++T+
Sbjct: 62 PLDC--KTCKALLNAFARVDFAAMNWVCPFCYHRNHFPSHYHSISEINLPGELYPQYTTV 119
Query: 502 EYTITRAQAM---PPIYLLVVDTCLXEEELGALKDSL 603
EYT+ + PP+++ V+DTC+ EEELG K +L
Sbjct: 120 EYTLPPDPSRVPPPPVFVFVLDTCMIEEELGYAKSAL 156
>At4g14160.2 68417.m02186 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 772
Score = 144 bits (348), Expect = 5e-35
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Frame = +1
Query: 142 IGDMATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYE 321
+ D A EE E DG+R TWN+WP +++EA++ V+PLA P++ P + + Y
Sbjct: 4 MADKAKVEEM--DWEGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPYA 61
Query: 322 PVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTI 501
P+ C TC+A+LN +VD+ A WVC FC+ RN FP Y +ISE + P EL P ++T+
Sbjct: 62 PLDC--KTCKALLNAFARVDFAAMNWVCPFCYHRNHFPSHYHSISEINLPGELYPQYTTV 119
Query: 502 EYTITRAQAM---PPIYLLVVDTCLXEEELGALKDSL 603
EYT+ + PP+++ V+DTC+ EEELG K +L
Sbjct: 120 EYTLPPDPSRVPPPPVFVFVLDTCMIEEELGYAKSAL 156
>At4g14160.1 68417.m02184 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 621
Score = 144 bits (348), Expect = 5e-35
Identities = 66/157 (42%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Frame = +1
Query: 142 IGDMATYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYE 321
+ D A EE E DG+R TWN+WP +++EA++ V+PLA P++ P + + Y
Sbjct: 4 MADKAKVEEM--DWEGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPYA 61
Query: 322 PVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTI 501
P+ C TC+A+LN +VD+ A WVC FC+ RN FP Y +ISE + P EL P ++T+
Sbjct: 62 PLDC--KTCKALLNAFARVDFAAMNWVCPFCYHRNHFPSHYHSISEINLPGELYPQYTTV 119
Query: 502 EYTITRAQAM---PPIYLLVVDTCLXEEELGALKDSL 603
EYT+ + PP+++ V+DTC+ EEELG K +L
Sbjct: 120 EYTLPPDPSRVPPPPVFVFVLDTCMIEEELGYAKSAL 156
>At1g05520.1 68414.m00565 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 783
Score = 142 bits (344), Expect = 2e-34
Identities = 63/157 (40%), Positives = 93/157 (59%), Gaps = 17/157 (10%)
Frame = +1
Query: 184 EDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILN 363
E DG+R TWNVWP +++EA++ V+P+A P++ D+P ++Y P+ C C A LN
Sbjct: 10 EGIDGVRMTWNVWPRTKVEASKCVIPVAACISPIRYHRDIPSVEYAPLRC--RICTAALN 67
Query: 364 PMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYTI---------- 513
P +VD+ AK+W+C CFQRN FPP Y +SE + P EL P ++T+EYT+
Sbjct: 68 PFARVDFLAKIWICPICFQRNHFPPHYHVMSETNVPCELYPQYTTVEYTLPNPSQPTGVG 127
Query: 514 -------TRAQAMPPIYLLVVDTCLXEEELGALKDSL 603
Q P +++ V+DTC+ EEE G K +L
Sbjct: 128 NFDQTGAVSGQPSPSVFVFVLDTCMIEEEFGYAKSAL 164
>At5g43670.1 68418.m05337 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 794
Score = 124 bits (298), Expect = 6e-29
Identities = 48/106 (45%), Positives = 76/106 (71%)
Frame = +1
Query: 193 DGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILNPMC 372
+G+R++WN WP+++ + LVVPL+ +Y PL +LP I Y+P++C+R C A+LNP
Sbjct: 10 EGLRWSWNSWPTTKSDCESLVVPLSIMYTPLMHFSELPTIPYDPLICSR--CGAVLNPYA 67
Query: 373 QVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYT 510
+VDY++++W C FCF +N FP Y+ I+E + PAEL P +S +EY+
Sbjct: 68 RVDYQSRIWSCPFCFHKNLFPRSYSGITETNLPAELFPTYSAVEYS 113
>At2g21630.1 68415.m02573 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 761
Score = 122 bits (294), Expect = 2e-28
Identities = 60/144 (41%), Positives = 88/144 (61%), Gaps = 4/144 (2%)
Frame = +1
Query: 184 EDRDGIRFTWNVWP--SSRIEATRLVVPLACLYQPLKE-RPDLPPIQYEPVLCTRNTCRA 354
E +DG+R WN+ P + + ++ VP++ +Y PLK R + Y P+ C TCR+
Sbjct: 8 EAQDGVRMPWNIIPVATKKEQSIDSEVPVSAIYTPLKPLRSQSLLLPYSPLRC--RTCRS 65
Query: 355 ILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYTI-TRAQAM 531
+LNP VD+ A W C FCF RNPFP Y+++++ + P EL P+ +T+EY + +
Sbjct: 66 VLNPYSVVDFSACNWGCPFCFNRNPFPLNYSSVADNNLPPELFPHSTTVEYLCDSFSSPS 125
Query: 532 PPIYLLVVDTCLXEEELGALKDSL 603
PP++L VVDTCL EEL LK SL
Sbjct: 126 PPVFLFVVDTCLISEELDFLKSSL 149
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 48.4 bits (110), Expect = 4e-06
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 15/161 (9%)
Frame = +1
Query: 157 TYEEFIQQNEDRDGIRFTWNVWPSSRIEATRLVVPLACLYQPLKERPD---LPPIQYEPV 327
++ E N +R T + P+S+ A+R +PL + PL E P+ +P I +
Sbjct: 307 SFAEMYPMNCHSRYLRLTTSAIPNSQSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGST 366
Query: 328 LCTR-NTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQY-------AAISEQHQPAEL- 480
R CR +NP + W CN C N P +Y + Q EL
Sbjct: 367 GIIRCRRCRTYVNPFVTFTDSGRKWRCNICSMLNDVPGEYFSHLDATGRRMDMDQRPELT 426
Query: 481 ---IPNFSTIEYTITRAQAMPPIYLLVVDTCLXEEELGALK 594
+ + EY + MPPIY ++D + + G L+
Sbjct: 427 KGSVEIIAPTEYMV--RPPMPPIYFFLIDVSISATKSGMLE 465
>At4g32640.1 68417.m04646 sec23/sec24 transport protein-related
Length = 1069
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Frame = +1
Query: 262 LACLYQPLK-ERPDLPPIQYE------PVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQ 420
LA + QPL P PIQ PV C+R C+ +NP + + + ++CNFC
Sbjct: 400 LALMVQPLALSHPSEEPIQVVDFGEGGPVRCSR--CKGYINPFMKFIDQGRKFICNFCGY 457
Query: 421 RNPFPPQY---AAISEQHQPAELIPNF--STIEYTITR----AQAMPPIYLLVVDTCLXE 573
+ P Y + + + P T+E+ T+ MP +Y ++D +
Sbjct: 458 TDETPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYMVRDPMPAVYFFLIDVSMNA 517
Query: 574 EELGA 588
+ GA
Sbjct: 518 IQTGA 522
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 35.9 bits (79), Expect = 0.021
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Frame = +1
Query: 262 LACLYQPLK-ERPDLPPIQYE------PVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQ 420
LA + QP+ P PIQ PV C+R C+ +NP + + + ++CN C
Sbjct: 403 LALIVQPMALSHPSEEPIQVVDFGESGPVRCSR--CKGYVNPFMKFIDQGRKFICNLCGY 460
Query: 421 RNPFPPQY---AAISEQHQPAELIPNF--STIEYTITR----AQAMPPIYLLVVDTCLXE 573
+ P Y + + A+ P T+++ T+ MP +Y ++D +
Sbjct: 461 TDETPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYMVRDPMPAVYFFLIDVSMNA 520
Query: 574 EELGA 588
+ GA
Sbjct: 521 IQTGA 525
>At5g51640.1 68418.m06403 leaf senescence protein-related (YLS7 )
annotation temporarily based on supporting cDNA
gi|13122291|dbj|AB047810.1|; identical to cDNA YLS7
leaf-senescence-related protein GI:13122291
Length = 501
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 375 GGLQS*IMGLQLLLPTKPISTSICCYI-RTASTRRTDS*LFHHRVHN 512
GGL S ++ LLL T PI +S+ Y RT +T+ FHH +H+
Sbjct: 30 GGLTSFVIFASLLLFTYPIGSSVTDYFYRTETTQNVQ---FHHSIHD 73
>At4g01810.1 68417.m00238 protein transport protein-related related
to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
Length = 880
Score = 32.3 bits (70), Expect = 0.26
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Frame = +1
Query: 310 IQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISE---QHQPAEL 480
IQ +P C C A NP + + W C C N +Y A S+ Q+ P
Sbjct: 197 IQRDPHRCLN--CGAYSNPYSSILIGSGQWQCVICENMNGSKGEYVASSKNELQNFPELS 254
Query: 481 IPNFSTIEYTITRAQAMP--------PIYLLVVDTCLXEEELGALKDSL 603
+P ++ R +P P+ +LV+D CL E L L+ SL
Sbjct: 255 LPLVDYVQTGNKRPGFVPASDSRTSAPV-VLVIDECLDEPHLQHLQSSL 302
>At1g77405.1 68414.m09014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 410
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/86 (19%), Positives = 35/86 (40%)
Frame = +1
Query: 304 PPIQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELI 483
PP Y + + CR + C+ R ++W N F+ F Y+ +E E++
Sbjct: 234 PPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGYYSVTNEIEGAIEMM 293
Query: 484 PNFSTIEYTITRAQAMPPIYLLVVDT 561
+ + + + P+ +V+T
Sbjct: 294 RTMKKLGHGVPGSSTYTPLIHALVET 319
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 421 RNPFPPQYAAISEQHQPAELIPNFSTIEYTITRAQAMPPI 540
RN FPP S + + P+ ST Y AQ+ PP+
Sbjct: 2 RNSFPPSDGGRSTTDRRQQSFPSSSTNRYNSRSAQSSPPL 41
>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1147
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 373 QVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPN 489
+++ + K W+C C Q+ +P ++ + EQ A+ P+
Sbjct: 260 RINRKWKFWMCRSCSQKFYYPKKFRSHLEQEHAAKFKPS 298
>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1121
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 373 QVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPN 489
+++ + K W+C C Q+ +P ++ + EQ A+ P+
Sbjct: 260 RINRKWKFWMCRSCSQKFYYPKKFRSHLEQEHAAKFKPS 298
>At2g34680.1 68415.m04260 leucine-rich repeat family protein contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
identical to cDNA hypothetical protein (AIR9) mRNA,
partial cds GI:3695020
Length = 1661
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 323 GSYCIGGRSGRSLSGWYKQAKGTTSLV 243
G Y GG G SL WY++ GT L+
Sbjct: 1239 GEY-FGGHEGPSLFSWYRENDGTIDLI 1264
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Frame = +1
Query: 274 YQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAI 453
Y ++ P PP+ Y PV + P+ Q ++ P PP Y
Sbjct: 626 YYAVQSPPPPPPVYYPPVTASPPPPPVYYTPVIQSPPPPPVYYSPVTQSPPPPPPVY--- 682
Query: 454 SEQHQPAELIPNFSTIEY-TITRAQAMPPIYLLVV 555
+ P P S + Y +T++ PP+Y L V
Sbjct: 683 ---YPPVTQSPPPSPVYYPPVTQSPPPPPVYYLPV 714
>At5g62330.1 68418.m07824 expressed protein
Length = 170
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +3
Query: 318 RACTLYTKYMQSYIEPNVPGGLQS*IMGLQLLLPTKPISTSICCYIRTAST 470
++ L++ ++QSY NVP ++ +GL+ P KP + C Y R + T
Sbjct: 31 KSTKLHSIFLQSY---NVPIPVRGHALGLRKYDPNKPSTPRGCSYRRESET 78
>At4g04750.1 68417.m00697 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 461
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 31 LLGFSKIDQFLGFLXXXILCFXQFAHVFITGSPYXFLIGDMATYEEF 171
LL FS+ FLG L I F Q + + TG+P LI M + +
Sbjct: 316 LLLFSQAGMFLGCLATAISFFLQKNNCWETGTPIMALISVMVYFGSY 362
>At3g06650.1 68416.m00774 ATP-citrate synthase, putative /
ATP-citrate (pro-S-)-lyase, putative / citrate cleavage
enzyme, putative strong similarity to ATP:citrate lyase
[Capsicum annuum] GI:13160653; contains Pfam profiles
PF00549: CoA-ligase, PF02629: CoA binding domain
Length = 608
Score = 27.5 bits (58), Expect = 7.3
Identities = 26/110 (23%), Positives = 49/110 (44%)
Frame = -3
Query: 438 RWKWVSLEAKVADP*FSSVIHLAHWVQYSSACISCTEYRLVLYRW*VGALLKRLVQASQR 259
R K V L K A F +V ++ + VQ + +S ++ +G+L L+ S
Sbjct: 496 RDKRVELLQKFARSNFPAVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLAGSGM 555
Query: 258 HNKPRSLNST*WPYVPSEPYAIAVFILLDELLVCGHIADQKXIRRTSYKH 109
K + ++ + Y +F+L + + GH DQK +++ Y+H
Sbjct: 556 FTK-QEIDE-----IVQIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599
>At5g49460.1 68418.m06119 ATP-citrate synthase, putative /
ATP-citrate (pro-S-)-lyase, putative / citrate cleavage
enzyme, putative strong similarity to ATP:citrate lyase
[Capsicum annuum] GI:13160653; contains Pfam profiles
PF00549: CoA-ligase, PF02629: CoA binding domain
Length = 608
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 201 YAIAVFILLDELLVCGHIADQKXIRRTSYKH 109
Y +F+L + + GH DQK +++ Y+H
Sbjct: 569 YLNGLFVLARSIGLIGHTFDQKRLKQPLYRH 599
>At3g56530.1 68416.m06286 no apical meristem (NAM) protein-related
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to NAC domain protein NAC2
(GI:21554255) {Arabidopsis thaliana}
Length = 319
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 430 FPPQYAAISEQHQPAELIPNFSTI 501
+ PQY + E HQP NFS +
Sbjct: 245 YQPQYCLLPEHHQPQPFPDNFSEL 268
>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 819
Score = 27.1 bits (57), Expect = 9.6
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Frame = +1
Query: 253 VVPLACLYQPLKERPDLPPIQYEPVLCTRNTCRAILNPMCQVDYRAKLW----VCNFCFQ 420
+V AC++Q + P +PV + AIL+ C V +K W CN +
Sbjct: 725 MVKTACMFQDKMVKKGFSP---DPV-----SFAAILHGFCVVG-NSKQWRNMDFCNLGEK 775
Query: 421 RNPFPPQYAAISEQHQPAELIPNFSTIEYT-ITRAQAMPPI 540
+Y+ + EQH P +I STI + + +A P+
Sbjct: 776 GLEVAVRYSQVLEQHLPQPVICEASTILHAMVEKADTKEPV 816
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,767
Number of Sequences: 28952
Number of extensions: 294401
Number of successful extensions: 637
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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