Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N15
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    25   0.54 
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    25   0.54 
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    25   0.54 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.8  

>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 140 LRCMRGFFGHHDXRXKEGRRKSNTVL 63
           + C   F G HD   KE R+  +TVL
Sbjct: 14  IACTHSFPGAHDEDSKEERKNVDTVL 39


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 140 LRCMRGFFGHHDXRXKEGRRKSNTVL 63
           + C   F G HD   KE R+  +TVL
Sbjct: 14  IACTHSFPGAHDEDSKEERKNVDTVL 39


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 140 LRCMRGFFGHHDXRXKEGRRKSNTVL 63
           + C   F G HD   KE R+  +TVL
Sbjct: 14  IACTHSFPGAHDEDSKEERKNVDTVL 39


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +2

Query: 422 SCCPWCC 442
           SCC WCC
Sbjct: 10  SCCCWCC 16


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 360 PVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADV 467
           P  R   P+R    R   RRTP    V+  D+ + +
Sbjct: 394 PPPRQTPPSRKESGRRRRRRTPRYNSVSKIDRASRI 429


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 162 PNLQVIKAMQSLKSRGYVKEQ 224
           PN+ +IK    L   G V E+
Sbjct: 258 PNIDIIKVQYELAKHGIVIEE 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,634
Number of Sequences: 438
Number of extensions: 2528
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)