Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N15
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 126 1e-29
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 125 2e-29
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 118 2e-27
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 30 0.97
At3g07260.1 68416.m00864 forkhead-associated domain-containing p... 28 3.9
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein... 27 9.0
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 126 bits (304), Expect = 1e-29
Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 6/163 (3%)
Frame = +3
Query: 48 LLLPKQNRVALSASLFXXGVMVAKKASHAPKHTELAXLPNLQVIKAMQSLKSRGYVKEQF 227
+++ + NR +S LF GV+ AKK + P+H + +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 228 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS---- 392
AW H+YW+LTNEGI++LR +L+LP EIVPATLK+ + G G RP P R
Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120
Query: 393 -AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGR 518
DR YR P + G + KA P F+GG G R
Sbjct: 121 RFGDRDGYRGGPKSGG--EYGDKAG-APADYQPGFRGGAGGAR 160
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 125 bits (301), Expect = 2e-29
Identities = 72/158 (45%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = +3
Query: 48 LLLPKQNRVALSASLFXXGVMVAKKASHAPKHTELAXLPNLQVIKAMQSLKSRGYVKEQF 227
+++ + NR + LF GV AKK + PKH L +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHP-LIDVPNLQVIKLMQSFKSKEYVRETF 59
Query: 228 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAED 401
AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + GP G R P RS D
Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119
Query: 402 RSAY-RRTPAAPGVAPHDKKADVGPGSADLEFKGGYGR 512
R + R G D+K P F+GG GR
Sbjct: 120 RPRFGDRDGYRGGPRGGDEKGG-APADFQPSFQGGGGR 156
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 118 bits (285), Expect = 2e-27
Identities = 72/167 (43%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Frame = +3
Query: 48 LLLPKQNRVALSASLFXXGVMVAKKASHAPKHTELAXLPNLQVIKAMQSLKSRGYVKEQF 227
+++ + NR + LF GV AKK + KH L +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHP-LIDVPNLQVIKLMQSFKSKEYVRETF 59
Query: 228 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA-- 395
AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S + GP G R P
Sbjct: 60 AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGD 119
Query: 396 ----EDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 515
DR YR P A G +K P F+G G+GRG
Sbjct: 120 RPRFGDRDGYRAGPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 30.3 bits (65), Expect = 0.97
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 51 LLPKQNRVALSASLFXXGVMVAKKASHAPKHTELAXLPNLQVIK 182
L+ N S S F GV +K AP++T+LA LP+ + +K
Sbjct: 331 LMANGNSNDFSVSSFLPGVGSSKAVQPAPRNTDLAGLPSRENLK 374
>At3g07260.1 68416.m00864 forkhead-associated domain-containing
protein / FHA domain-containing protein contains Pfam
profile: PF00498 Forkhead-associated (FHA) domain
(putative nuclear protein)
Length = 251
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 72 HGFVWAATDLKAAWRRTEQQ 13
HG W+ TD+K W+R Q
Sbjct: 218 HGSGWSVTDIKGVWKRMASQ 237
>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAC domain protein NAM GB: AAD17313
GI:4325282 from [Arabidopsis thaliana]
Length = 429
Score = 27.1 bits (57), Expect = 9.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 123 ASHAPKHTELAXLPNLQVIKAMQSLKSRGYVKEQ 224
+S P HT + +P+L +I+ + + K++ K+Q
Sbjct: 329 SSDEPGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,035,003
Number of Sequences: 28952
Number of extensions: 205333
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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