Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N14
(741 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 371 e-101
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 335 6e-91
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 260 2e-68
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 253 4e-66
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 227 2e-58
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 159 5e-38
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 121 2e-26
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 120 5e-26
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 116 5e-25
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 115 1e-24
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 113 3e-24
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 112 1e-23
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 107 3e-22
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 104 2e-21
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 102 1e-20
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 100 4e-20
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 99 1e-19
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 97 4e-19
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 89 8e-17
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 89 1e-16
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 85 2e-15
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 83 9e-15
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 72 1e-11
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 67 5e-10
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 39 0.15
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 35 1.8
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4; ... 34 4.2
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 33 5.6
UniRef50_Q8Y440 Cluster: 50S ribosomal protein L3; n=19; Bacteri... 33 7.4
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 371 bits (912), Expect = e-101
Identities = 164/234 (70%), Positives = 193/234 (82%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
MSHRKFSAPRHGS+GF P+K S RHRGKVK+FPK DPSKPVHLTAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 399
DRPGSK+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 400 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 579
NW+ WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 580 MEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
MEIQ+NGGT+ +K+ WA E LE+ +PV+ VF Q EMID IGVTKGKGYK VTSR
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSR 234
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 335 bits (824), Expect = 6e-91
Identities = 151/234 (64%), Positives = 182/234 (77%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
MSHRKFSAPRHG +GF P K S RHRGKVK +P+ DPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 399
RPG KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 400 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 579
+W+ W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHI
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 580 MEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
MEIQLNGGT+ +KV WA LEK +PV SVF+Q E+ID I VTKG+G K VTSR
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSR 234
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 260 bits (638), Expect = 2e-68
Identities = 113/168 (67%), Positives = 133/168 (79%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
MSHRKFSAPRHG MGF PKK SR +RG++KAFPK D SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 399
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 400 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 543
NW WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 36.7 bits (81), Expect = 0.60
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 667 VFAQXEMIDCIGVTKGKGYKXVTSR 741
V A +MID IGVT+G G+K VTSR
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSR 186
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 253 bits (619), Expect = 4e-66
Identities = 119/239 (49%), Positives = 158/239 (66%), Gaps = 3/239 (1%)
Frame = +1
Query: 34 SSMSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVR 213
++MSH KF PRHG +GF P+K SR+ RG+ ++FPK DPS+ HLT+F+ YKAGMTH+VR
Sbjct: 50 TNMSHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVR 109
Query: 214 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 393
+ DRPGSK+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRF
Sbjct: 110 DVDRPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRF 169
Query: 394 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ--- 564
YKNW + GR + + K + ++RV+AHTQ++ L+ +
Sbjct: 170 YKNWKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGV 229
Query: 565 KKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
KKAH+ EIQ+NGGTI K++ A LEK + +DSVF Q E D VTKG G+ V R
Sbjct: 230 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKR 288
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 227 bits (555), Expect = 2e-58
Identities = 115/232 (49%), Positives = 148/232 (63%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
MS+R FSAPRHGS+GF P+K S H GKVK FPK D SKPVHLT F+ +KA MTH++++
Sbjct: 1 MSYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKV 60
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 399
DRP SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYK
Sbjct: 61 DRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYK 120
Query: 400 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 579
NW+ ++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+
Sbjct: 121 NWHSEKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHL 174
Query: 580 MEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVT 735
MEIQ+ G + W Q E+ID I TKG GYK VT
Sbjct: 175 MEIQVMG---HCGLSWR-----------EAVNQDEIIDVIKETKGNGYKGVT 212
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 159 bits (387), Expect = 5e-38
Identities = 92/214 (42%), Positives = 127/214 (59%)
Frame = +1
Query: 97 KXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 276
K S +H+GKV FPK SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 277 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 456
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 457 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXE 636
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 637 HLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTS 738
LE+ +PV+ +F + + IG TKGK YK ++S
Sbjct: 156 KLEQQVPVNHIF-RVRRLFVIGTTKGKHYKGISS 188
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 121 bits (292), Expect = 2e-26
Identities = 89/238 (37%), Positives = 126/238 (52%), Gaps = 4/238 (1%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
M RK APR GS+GF P+K + R +VK +P+ D KPV L AF+GY+AGMTHV
Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVD 59
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRRF 393
DRPG + KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 60 DRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI 119
Query: 394 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLL-KQRQKK 570
+ + KS+E+ K VR+IA +Q KL +KK
Sbjct: 120 -------------STLGSFDTDKMLKSLEERLDK----AEDVRLIAASQPKLAGGLSKKK 162
Query: 571 AHIMEIQLNGGTIEDKV-KWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
++EI++ G + K+ +A + L I V+ VF + +++D I VTKGKG++ V R
Sbjct: 163 PDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKR 220
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 120 bits (288), Expect = 5e-26
Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 7/233 (3%)
Frame = +1
Query: 64 PRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 243
P+ GSMGF P+K + R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 244 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 417
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 418 XXXXXX--XXXXWQDELGRKSIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 582
+ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 583 EIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
E+ L GG K++WA E L I +D V+ + +D +G+TKGKG++ V R
Sbjct: 186 EVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKR 238
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 116 bits (280), Expect = 5e-25
Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 2/228 (0%)
Frame = +1
Query: 64 PRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 243
PR GS+ F P+K ++R +++++P+ D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 244 KKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXX 417
+E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI-------- 115
Query: 418 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLN 597
+ RK++E D + + VRV+ HT KL +KK I+EI++
Sbjct: 116 ---------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIG 165
Query: 598 GGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
G IE+++ +A E L K + + VF + E++D IGVTKGKG++ R
Sbjct: 166 GKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKR 213
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 115 bits (277), Expect = 1e-24
Identities = 85/275 (30%), Positives = 134/275 (48%), Gaps = 41/275 (14%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFP------------------KXDPSKPVH 165
M HRK+SAPRHGS+G P+K + + +++++P K KPV
Sbjct: 1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV- 59
Query: 166 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRA 342
L ++ YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL +
Sbjct: 60 LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLS 119
Query: 343 LLTVW---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRK 471
VW E + E + + N + E G K
Sbjct: 120 FGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFK 179
Query: 472 SIEKDFKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXE 636
+E ++K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A +
Sbjct: 180 FLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEK 239
Query: 637 HLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
L + VD VF + + ID IGVTKGKG++ V R
Sbjct: 240 LLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKR 274
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 113 bits (273), Expect = 3e-24
Identities = 77/227 (33%), Positives = 110/227 (48%), Gaps = 1/227 (0%)
Frame = +1
Query: 64 PRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 243
P+ GSMGF P+K + R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 244 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 423
E+ +AVT++E PPM + V GY TP+G + WA S D +
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA---SADKLSDVIPSLPRRIPE 122
Query: 424 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM-KLLKQRQKKAHIMEIQLNG 600
D+L + + VR+I +Q K+ K IME+ L G
Sbjct: 123 RKEHDANAHLDKLRESDLAE-----------VRLIVSSQPDKVSAVGSKSPEIMEMGLTG 171
Query: 601 GTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
G + ++ WA E L + + ++ VF ID IGVTKG G + V R
Sbjct: 172 GDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRR 218
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 112 bits (269), Expect = 1e-23
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 5/239 (2%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
M HRK ++PR GS G P+K S + +P+ + P L F+GYK GMTHV
Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMID 59
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRR 390
D P S N KEI VT++E PP++ + + Y G ++T W+ + D RR
Sbjct: 60 DWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRR 119
Query: 391 FYK-NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQK 567
+ + + + +L I+ + +++ + R++ TQ + + K
Sbjct: 120 IHSISSFLKDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGK 173
Query: 568 KA-HIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
KA ++EIQ+ GG + ++ +A L K I + VF + ++ID +GVTKGKG+ V R
Sbjct: 174 KAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKR 232
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 107 bits (257), Expect = 3e-22
Identities = 69/226 (30%), Positives = 107/226 (47%)
Frame = +1
Query: 64 PRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 243
PR GS+ F P+K + R +++++P + V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 244 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 423
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF-----TVPK 123
Query: 424 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 603
+EL + I ++ +RVI TQ K +KK +ME ++ G
Sbjct: 124 DGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 604 TIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
+ ++ ++A E L + I VF + E++D +TKGKG++ V R
Sbjct: 174 DVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKR 219
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 104 bits (250), Expect = 2e-21
Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 10/240 (4%)
Frame = +1
Query: 52 KFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPG 231
K PR GS+GF P+K ++ +++++PK V + F GYKAGMTH++ D PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPK---ETEVRMLGFAGYKAGMTHILMIDDEPG 59
Query: 232 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK- 399
N KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 60 -LTNGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKP 118
Query: 400 ----NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSV--VRVIAHTQMKLLKQR 561
+Y + E+ + + + + MI+ + VR I TQ ++K +
Sbjct: 119 KPKMTFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK 177
Query: 562 QKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
KK +ME + G ++E+K + E L K + V V + E++D I VTKGKG + R
Sbjct: 178 -KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKR 236
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 102 bits (244), Expect = 1e-20
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 11/245 (4%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
M RK APR GS G P+K + +V+++P D KP+ AF+GYK GMTHV+
Sbjct: 1 MGARKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMID 57
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW-------AEHMS 372
DR +EI VT+IETPPMV +G V GY + G AL VW E +
Sbjct: 58 DREHVDTAGQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVWRNPSDTIKEKLG 116
Query: 373 EDCRRRFYKNWYXX--XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMK 546
E+ R++ ++ ++ K ++ D +K++ ++ I
Sbjct: 117 EEVLRKYLLGMSKRLPHMVEELGPGKGFEFKVPEKELDVDPEKVVGVGLIMSSIPFLAGG 176
Query: 547 LLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYK 726
+ K K I+E+++ G +E +++A L + + V+ V + +D IGVTKGKG++
Sbjct: 177 VSK---KAPDILEVKVGGSPVE-ALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQ 232
Query: 727 XVTSR 741
V R
Sbjct: 233 GVIKR 237
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 100 bits (239), Expect = 4e-20
Identities = 71/226 (31%), Positives = 107/226 (47%)
Frame = +1
Query: 64 PRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 243
PR GS + P+K +R +V+ +P+ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 244 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 423
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 424 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 603
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 604 TIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
E + A E L K + + VF + + ID I VTKGKG++ R
Sbjct: 166 PPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKR 211
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 98.7 bits (235), Expect = 1e-19
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 1/235 (0%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
M RK +PR GS+ + P+ ++ +++A+PK D +P + A G+KAG +V
Sbjct: 1 MGARKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSID 59
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-Y 396
DR K++V T++ TPP++ +G+ GY + GL A V+AE + + +
Sbjct: 60 DREKVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISL 119
Query: 397 KNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAH 576
KN + E + EK KK+ ++V I+ + L QKK +
Sbjct: 120 KN----------------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPY 159
Query: 577 IMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
I E ++GG I + E L K I +D +F +D +TKGKG++ V R
Sbjct: 160 IFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKR 214
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 97.1 bits (231), Expect = 4e-19
Identities = 75/229 (32%), Positives = 104/229 (45%), Gaps = 3/229 (1%)
Frame = +1
Query: 64 PRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 243
PR GSMGF P+K + + ++P D V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 244 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 423
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR-----------T 113
Query: 424 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHT-QMKLLKQRQKKAHIMEIQLNG 600
DEL IE + I + +RVI HT +K +ME ++ G
Sbjct: 114 LSVPDEGGDTDEL----IEALDTEEI---ADIRVITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 601 GTIEDKVKWAXEHLEK--PIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
GT+ D++++A + +E VF E D G+TKGKG + R
Sbjct: 167 GTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKR 215
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 89.4 bits (212), Expect = 8e-17
Identities = 61/227 (26%), Positives = 109/227 (48%)
Frame = +1
Query: 61 APRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 240
APR GSMGF P+K + R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 241 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 420
N + + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 58 NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK------- 110
Query: 421 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 600
++++ ++ F V++I TQ +K + K I +I + G
Sbjct: 111 ----LKNYNFEEK------KEQFLSKADNADEVKIIVSTQPWKIKLK-KTPEIFDIPIGG 159
Query: 601 GTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
+ K+++A L K + ++ VF + + +D I VTKGKG++ V R
Sbjct: 160 SDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKR 206
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 89.0 bits (211), Expect = 1e-16
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 1/221 (0%)
Frame = +1
Query: 61 APRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 240
APR GS+G+ P+ +R + K++ + + + F+G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPKIQ--GFVGFKAGMSHIVMVDDRPHSAT 63
Query: 241 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE-DCRRRFYKNWYXXX 417
EI VTI+E P M G+ Y ++P+G + + W + + KN Y
Sbjct: 64 EGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYKTD 123
Query: 418 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLN 597
EL +K + D + V+ V +++ + +K +ME ++
Sbjct: 124 EQLAKIA------ELVKKGVVADLR-------VMTVTLTSEVSGIP--KKVPELMENRIA 168
Query: 598 GGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKG 720
GG + + ++A + K + + VFA E++D +TKG G
Sbjct: 169 GGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYG 209
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 85.0 bits (201), Expect = 2e-15
Identities = 48/128 (37%), Positives = 66/128 (51%)
Frame = -1
Query: 732 DTFVSFALGDTNAVNHFXLGKHRIDRDRFLQMFXGPFHFVLDGTTVKLDFHNVXXXXXXX 553
DT + GD+N +NHF L ++R++R+ F ++F GP +FV DGTTV LDF V
Sbjct: 46 DTLETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQW 105
Query: 552 XXXXXSVGNDSYNTTVADHLLEIFFY*FASKLILPFLTGFSESLLLAFVPVFVEATSTVF 373
V DS N +V + F F + F F E LL F+PV VE++S F
Sbjct: 106 SLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV--FTRVFGEGFLLGFIPVLVESSSDFF 163
Query: 372 RHMLRPDS 349
+ PDS
Sbjct: 164 TQVFSPDS 171
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 82.6 bits (195), Expect = 9e-15
Identities = 59/234 (25%), Positives = 107/234 (45%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
M HRKFS PR GS+ + P+ +R +++ +P+ +P L A G+KAG +V
Sbjct: 1 MGHRKFSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSID 58
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 399
DR + K++V T++ TPP+ +G+ GY + +G V+AE + + +
Sbjct: 59 DREHTPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPREVAK---- 114
Query: 400 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 579
Y GR + E+ + M+ + + I + QK+ +I
Sbjct: 115 --YIVLRN-------------GRLNAER-AETMLGGTAEIYGILGVSPRSAGLEQKRPYI 158
Query: 580 MEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
E + GG+++++ + + L K + V +D +TKGKG++ V R
Sbjct: 159 FEAPVRGGSMKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQR 212
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 72.1 bits (169), Expect = 1e-11
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 1/220 (0%)
Frame = +1
Query: 67 RHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINK 246
R GSM + P+ ++ +++++P+ S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWPEI--SGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 247 KEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXX 426
+ I VT+IE PP+ +G+ Y E G ++ Y+ W
Sbjct: 66 QPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVV---------------YEKWTQNLDKE 110
Query: 427 XXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG- 603
++ E+ K + + Y V ++A + KK I E+++ GG
Sbjct: 111 LFKKITTFK-EVKEKPVPE------TYADVRLIVATRNKDVPGIPSKKPEIFELRIGGGN 163
Query: 604 TIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGY 723
+++++ ++A HL K I + + +D + VTKGKG+
Sbjct: 164 SVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGF 203
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 66.9 bits (156), Expect = 5e-10
Identities = 38/105 (36%), Positives = 55/105 (52%)
Frame = +1
Query: 40 MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
MSHRKF PR GS+GF PKK S R K + + +++ F K THV+R
Sbjct: 1 MSHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRIC 60
Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 354
+ SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 61 NIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
Score = 47.2 bits (107), Expect = 4e-04
Identities = 26/82 (31%), Positives = 48/82 (58%)
Frame = +1
Query: 496 MIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFA 675
+I++ + R + T +K +KK + E + GG+ + K+++ + K I ++S+F
Sbjct: 136 IIKHSVIFRFLCCTFIKTNSMIKKK-YFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFH 194
Query: 676 QXEMIDCIGVTKGKGYKXVTSR 741
+ ++ID IG+TKG G K V SR
Sbjct: 195 ENDIIDAIGITKGHGTKGVVSR 216
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 38.7 bits (86), Expect = 0.15
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +1
Query: 112 HRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 249
HR + K FPK D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.1 bits (77), Expect = 1.8
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 246 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWT 335
E DRG CHH+ S GLCR C + P+ T
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAAT 65
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 35.1 bits (77), Expect = 1.8
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +1
Query: 460 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEH 639
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 640 LEKPIPVDSVFAQXEMI 690
EKPI ++ + + I
Sbjct: 195 KEKPISLEEILDPEDRI 211
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 4.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 448 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 603
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 33.9 bits (74), Expect = 4.2
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 97 KXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 270
K +++ K+K + + K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 271 IIETPPMVCVGVVG 312
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4;
Arabidopsis thaliana|Rep: Putative F-box protein
At1g33020 - Arabidopsis thaliana (Mouse-ear cress)
Length = 518
Score = 33.9 bits (74), Expect = 4.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 665 ESTGIGFSRCSXAHFTLSSMVPPLSWISIM*AFFCRCFNSFI 540
E TG+ S+C +H +S + PL W+SI+ F + SF+
Sbjct: 474 EFTGVKTSKCDTSHLQVSCELSPLCWLSIL-LFLVMVYMSFM 514
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.5 bits (73), Expect = 5.6
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -3
Query: 424 PSSCICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRHKPSEESR 275
PS+ I T SD++ L P QS V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_Q8Y440 Cluster: 50S ribosomal protein L3; n=19;
Bacteria|Rep: 50S ribosomal protein L3 - Listeria
monocytogenes
Length = 209
Score = 33.1 bits (72), Expect = 7.4
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +1
Query: 652 IPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
+ VD VFA+ ++ID GV+KGKG++ V R
Sbjct: 97 VKVD-VFAEGDIIDATGVSKGKGFQGVIKR 125
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,510,424
Number of Sequences: 1657284
Number of extensions: 14965647
Number of successful extensions: 35159
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35128
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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