Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N14
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   316   3e-87
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   315   4e-87
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   3.7  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   4.9  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    26   6.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  316 bits (775), Expect = 3e-87
 Identities = 143/234 (61%), Positives = 181/234 (77%)
 Frame = +1

Query: 40  MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
           MSH KF  PRHGS+GF P+K + R RGKVKAFPK D SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 399
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 400 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 579
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 580 MEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
           MEIQ+NGG++ DKV+WA EH EK + + S F Q EMID IGVT+GKG +  T+R
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  315 bits (774), Expect = 4e-87
 Identities = 142/234 (60%), Positives = 181/234 (77%)
 Frame = +1

Query: 40  MSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREP 219
           MSH KF  PRHGS+GF P+K + R RGKVKAFPK D SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 220 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 399
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 400 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 579
           NW+             + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+
Sbjct: 121 NWFKSKKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHL 178

Query: 580 MEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
           MEIQ+NGG++ DKV+WA EH EK + + S F Q EMID IGVT+GKG +  T+R
Sbjct: 179 MEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTAR 232


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 314 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 466
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 508 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 618
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 670 FAQXEMIDCIGVTKGKGYKXVTSR 741
           F   + +D  G+TKGKG+  V  R
Sbjct: 145 FKPKQYVDVKGITKGKGFAGVMKR 168


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 471  FASKLILPFLTGFSESLLLAFVPVFVEATST 379
            F SKL L  +  F E + LAF+  F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,503
Number of Sequences: 5004
Number of extensions: 59926
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)