Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N14
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               337   6e-93
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         254   4e-68
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)                  31   1.3  
SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  337 bits (828), Expect = 6e-93
 Identities = 153/234 (65%), Positives = 180/234 (76%), Gaps = 1/234 (0%)
 Frame = +1

Query: 43  SHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHVVREPD 222
           SHRKF APRHGS+GF P+K  +RHRGKVK+FPK D + P HLTAFIG+KAGMTH++RE +
Sbjct: 1   SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60

Query: 223 RPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 402
           +PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKN
Sbjct: 61  KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKN 120

Query: 403 WYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIM 582
           W              W D+ G+KSIE+DF  M +YC V+RVI HTQ KLLK RQKKAHIM
Sbjct: 121 WCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIM 180

Query: 583 EIQLNGG-TIEDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKGKGYKXVTSR 741
           EIQ+NGG  + +KV W  E LE P PV  VF+  EMID IGVTKG G+K VT R
Sbjct: 181 EIQVNGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYR 234


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  254 bits (623), Expect = 4e-68
 Identities = 111/171 (64%), Positives = 133/171 (77%)
 Frame = +1

Query: 28  LSSSMSHRKFSAPRHGSMGFXPKKXSRRHRGKVKAFPKXDPSKPVHLTAFIGYKAGMTHV 207
           L   MSHRKF APRHGS+GF P+K  +RHRGKVK+FPK D + P HLTAFIG+KAGMTH+
Sbjct: 44  LEPKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHI 103

Query: 208 VREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 387
           +RE ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+R
Sbjct: 104 LREVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKR 163

Query: 388 RFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQ 540
           RFYKNW              W D+ G+KSIE+DF  M +YC V+RVI HTQ
Sbjct: 164 RFYKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214


>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
          Length = 1250

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 580 MEIQLNGGTI-EDKVKWAXEHLEKPIPVDSVFAQXEMIDCIGVTKG 714
           M I L+G +I  D++ W   H   P P      Q +  D IGVT G
Sbjct: 201 MLIILHGLSIAHDEILWLVRHCCNPAPRSRKLTQEDFFDSIGVTAG 246


>SB_36686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 280 TPPMVCVGVVGYIETPHGLRAL-LTVWAEHMSEDCRRRFY 396
           TP  +C+G  GY+ T   L+ L LTV    M E  + +++
Sbjct: 301 TPGRLCIGSYGYVATQQFLQLLRLTVLPPVMIEKAKNQYH 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,578,298
Number of Sequences: 59808
Number of extensions: 491823
Number of successful extensions: 1026
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)