Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N14
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.0  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              21   9.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.2  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 272 MVTASTISFLLIFEPGRSGSLTTWVI 195
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 292 VCVGVVGYIETPHGLRALLTV 354
           VCVG +   E   GLRA++ V
Sbjct: 12  VCVGALTLEELQIGLRAVIPV 32


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 306 CWIH*DPSWTTRSFDCLG 359
           C  + D +W T + DC G
Sbjct: 765 CKCYNDRTWNTNAVDCSG 782


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 183 TDKSSQMNRFARVXFRERLDLTTMT 109
           TDK S M+R  R+   +R+D    T
Sbjct: 435 TDKMSSMDRMDRMDRVDRMDTMDRT 459



 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 183 TDKSSQMNRFARVXFRERLDLT 118
           TDK S+++R  ++   +R+D T
Sbjct: 507 TDKMSRIDRMDKIDRMDRMDRT 528


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 464 PSSSCHFLLALVKAFFLHL 408
           P+ S H+LLAL+   F  L
Sbjct: 43  PNPSLHYLLALLYILFTFL 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,593
Number of Sequences: 438
Number of extensions: 3850
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)