Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N13
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 30 0.29
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 29 0.90
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.7
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 26 4.8
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 26 4.8
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 4.8
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 4.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 26 6.3
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 26 6.3
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 26 6.3
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 25 8.4
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s... 25 8.4
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 8.4
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 579 SLKIRSMNNEWGINKELDFTLGAFNGLRXLHTLDLAYNNIXKIPSDLF 722
SLK+ S EW +NK L+ G+ N L +N+ K+PS+ F
Sbjct: 778 SLKLCSEVQEWSLNKVLN---GSINEKLAADKCVLVFNSFGKLPSNFF 822
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 28.7 bits (61), Expect = 0.90
Identities = 31/96 (32%), Positives = 42/96 (43%)
Frame = +3
Query: 411 SDGTERLTIRCSQLLFESTLRDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKI 590
S GTE + S L E Q L + +CK+ +P NVF L+ L SL +
Sbjct: 305 SGGTENQSANSSSSLMEKDAILSSSSWSQ-LLYLRCSSCKLKSIPKNVFLSLQSLVSLDL 363
Query: 591 RSMNNEWGINKELDFTLGAFNGLRXLHTLDLAYNNI 698
NE E+ + LG L L +L+LA N I
Sbjct: 364 --SGNEL---TEIPYALGE---LPQLCSLNLASNKI 391
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 480 HFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGL 659
H + GL+E+ + + L L GN L G + IR +N + L +L +F+ L
Sbjct: 614 HLDSLIGLSELC-PSIEELTLEGNEIAYLTGCP-VTIRDLN---AVENRLS-SLTSFSNL 667
Query: 660 RXLHTLDLAYNNI 698
L LD++YN +
Sbjct: 668 LNLQYLDISYNQL 680
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 281 DGRGAYGSTGRCRCVFSCGKCGRYGGVQCTDVVVGQRCRRFDALG 415
+G+ + G G R +C CG YG Q D +G +C +G
Sbjct: 101 NGQQSGGRFGGHRSNMNCYACGSYGH-QARDCTMGVKCYSCGKIG 144
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 383 RRQRPYIALHHTVHTCHTKTRICIVRCFRKRRAHHKTK----EYCVYYHFNKN 237
+R R ++ TC T + + F+ RR+ HKT+ + C+Y ++ N
Sbjct: 59 KRHREFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIYSPYSYN 111
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 576 SDLASPRRRCPEVAISCNFESISPLDLASFQNDD 475
S +ASP R P+ AIS +E+ P +S +++
Sbjct: 73 SSIASPSSRIPDKAISQYYETSPPSSTSSLSSNN 106
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 180 ATLIQDNFVLTSNENEMDTVLIKMIINTIFFCF 278
A LI N+ + N D L++ ++NTI CF
Sbjct: 200 AKLIDYNYFDSPTLNPSDITLMERVVNTIASCF 232
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 583 KDFRPRKPSKTLPGSRNILQF*ID 512
+DFRPR+P +T P + + L+ I+
Sbjct: 113 RDFRPRRPEQTRPYTYDFLRHQIE 136
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -1
Query: 531 SCNFESISPLDLASFQNDDP*GCSRTGAGYSGL*AAPCH--PSASNRRHLCPTTTSVHCT 358
S + S+SP+ ++ +ND R + + + H PSA N R + +S +
Sbjct: 139 SSSSASVSPISPSANRNDS----KRQASSFRRSPPSSVHMKPSAFNGRKVSRRPSS---S 191
Query: 357 PPYRPHLPHENT 322
PP P +PHE T
Sbjct: 192 PPPIPSIPHETT 203
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 354 PYRPHLPHENTHLHRPVLP-*APRPSQNKRILCLLSF**ELCP 229
P R HLP +N + P+LP +P P +R L F L P
Sbjct: 62 PLREHLPLKNVYSQVPLLPVWSPIPKGPRRFLLPPKFHYRLSP 104
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 321 ACFRVASVDGMVECNVRTLSSDRD 392
ACF+ +S+ MVE N RT S +
Sbjct: 234 ACFKTSSIIEMVENNYRTWCSQNE 257
>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 689 ISEVQSVELSQPVESAQRKVQL 624
+SE + +ELS+ +ES Q+KV+L
Sbjct: 12 LSESEQLELSKFIESEQQKVKL 33
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +1
Query: 58 YVAHLVLLYSLLTFIIVVIA--TFPHRARTF 144
Y+ H ++LY LTF++ +++ + P+ TF
Sbjct: 247 YLEHQLILYDTLTFVVHLLSQKSLPYSLTTF 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,241
Number of Sequences: 5004
Number of extensions: 65492
Number of successful extensions: 214
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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