Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N13
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical p... 35 0.052
Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical pr... 35 0.052
U41625-2|ABS19463.1| 584|Caenorhabditis elegans Hypothetical pr... 34 0.091
U41625-1|AAA83325.2| 586|Caenorhabditis elegans Hypothetical pr... 34 0.091
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 33 0.16
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 33 0.16
AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical ... 33 0.21
AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical ... 33 0.21
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 32 0.37
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 30 1.9
AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical ... 29 2.6
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 29 4.5
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 29 4.5
AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear recep... 29 4.5
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 29 4.5
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport... 29 4.5
AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormo... 29 4.5
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 29 4.5
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 28 5.9
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 28 5.9
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 28 5.9
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 5.9
Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 44.8 bits (101), Expect = 6e-05
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Frame = +3
Query: 354 VECNVRTLSSDRDVVGSMHSDGTERLTIRCSQL-LFESTLRDHHFGKMQGLAEISIQNCK 530
+EC +++S + + S++ RLTIR S + + L ++ F K ++ ++ C
Sbjct: 59 IECESASIASVSENLASLNGTELGRLTIRDSTVNVLPQDLFENVFAK-----QVKLERCG 113
Query: 531 ILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLRXLHTLDLAYNNIXKIP 710
+ L N F+ L G S ++ S+ N+ G F GL+ L TLDLA N I +I
Sbjct: 114 LSTLQPNSFQSLGG--SAELLSLRE----NRIKKLEKGLFTGLKSLKTLDLAMNKIQEID 167
Query: 711 SDLF 722
F
Sbjct: 168 VGAF 171
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/85 (31%), Positives = 43/85 (50%)
Frame = +3
Query: 468 LRDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGA 647
L+ F M+ L ++++QNC + + F GL L+ L I S NN + +D+T+
Sbjct: 190 LKTGTFDGMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQL-ILSNNN----LENIDWTI-- 242
Query: 648 FNGLRXLHTLDLAYNNIXKIPSDLF 722
F+ L+ L LDL N I + F
Sbjct: 243 FSALKNLRVLDLGSNKISNVEMKSF 267
Score = 35.9 bits (79), Expect = 0.030
Identities = 26/82 (31%), Positives = 41/82 (50%)
Frame = +3
Query: 483 FGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLR 662
F +++ + E+ + I L F+G++ LK L +++ N E I K GAF GL
Sbjct: 171 FEELKKVEELLLNENDIRVLKTGTFDGMKNLKKLTLQNCNLEI-IQK------GAFRGLN 223
Query: 663 XLHTLDLAYNNIXKIPSDLFCA 728
L L L+ NN+ I +F A
Sbjct: 224 SLEQLILSNNNLENIDWTIFSA 245
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 44.8 bits (101), Expect = 6e-05
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Frame = +3
Query: 354 VECNVRTLSSDRDVVGSMHSDGTERLTIRCSQL-LFESTLRDHHFGKMQGLAEISIQNCK 530
+EC +++S + + S++ RLTIR S + + L ++ F K ++ ++ C
Sbjct: 59 IECESASIASVSENLASLNGTELGRLTIRDSTVNVLPQDLFENVFAK-----QVKLERCG 113
Query: 531 ILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLRXLHTLDLAYNNIXKIP 710
+ L N F+ L G S ++ S+ N+ G F GL+ L TLDLA N I +I
Sbjct: 114 LSTLQPNSFQSLGG--SAELLSLRE----NRIKKLEKGLFTGLKSLKTLDLAMNKIQEID 167
Query: 711 SDLF 722
F
Sbjct: 168 VGAF 171
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/85 (31%), Positives = 43/85 (50%)
Frame = +3
Query: 468 LRDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGA 647
L+ F M+ L ++++QNC + + F GL L+ L I S NN + +D+T+
Sbjct: 190 LKTGTFDGMKNLKKLTLQNCNLEIIQKGAFRGLNSLEQL-ILSNNN----LENIDWTI-- 242
Query: 648 FNGLRXLHTLDLAYNNIXKIPSDLF 722
F+ L+ L LDL N I + F
Sbjct: 243 FSALKNLRVLDLGSNKISNVEMKSF 267
Score = 35.9 bits (79), Expect = 0.030
Identities = 26/82 (31%), Positives = 41/82 (50%)
Frame = +3
Query: 483 FGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLR 662
F +++ + E+ + I L F+G++ LK L +++ N E I K GAF GL
Sbjct: 171 FEELKKVEELLLNENDIRVLKTGTFDGMKNLKKLTLQNCNLEI-IQK------GAFRGLN 223
Query: 663 XLHTLDLAYNNIXKIPSDLFCA 728
L L L+ NN+ I +F A
Sbjct: 224 SLEQLILSNNNLENIDWTIFSA 245
>Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical
protein T23G11.6a protein.
Length = 653
Score = 35.1 bits (77), Expect = 0.052
Identities = 27/86 (31%), Positives = 39/86 (45%)
Frame = +3
Query: 465 TLRDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLG 644
TL F ++ L E+ ++ I + F+GL L L S+ + E D
Sbjct: 270 TLEPGQFATLKKLKELDLRVNLIENITAYAFDGLESLTRL---SLAGNFISKLEPD---- 322
Query: 645 AFNGLRXLHTLDLAYNNIXKIPSDLF 722
F GL L LDL +N I IP+D+F
Sbjct: 323 VFFGLSSLEELDLGWNEIKTIPTDVF 348
>Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical
protein T23G11.6b protein.
Length = 616
Score = 35.1 bits (77), Expect = 0.052
Identities = 27/86 (31%), Positives = 39/86 (45%)
Frame = +3
Query: 465 TLRDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLG 644
TL F ++ L E+ ++ I + F+GL L L S+ + E D
Sbjct: 270 TLEPGQFATLKKLKELDLRVNLIENITAYAFDGLESLTRL---SLAGNFISKLEPD---- 322
Query: 645 AFNGLRXLHTLDLAYNNIXKIPSDLF 722
F GL L LDL +N I IP+D+F
Sbjct: 323 VFFGLSSLEELDLGWNEIKTIPTDVF 348
>U41625-2|ABS19463.1| 584|Caenorhabditis elegans Hypothetical
protein K03A1.2b protein.
Length = 584
Score = 34.3 bits (75), Expect = 0.091
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = +3
Query: 471 RDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAF 650
R F + L E+S+ NC I LP ++FE L L L +R L+
Sbjct: 293 RKEMFKGLDSLEELSLDNCNIENLPADIFEYLPKLVKLSLR--------ENPLEEIPAVV 344
Query: 651 NGLRXLHTLDLAYNNIXKIPSDLF 722
L+ L +DL+ N+ +I F
Sbjct: 345 AHLKSLKDIDLSVTNLTEIRDHAF 368
>U41625-1|AAA83325.2| 586|Caenorhabditis elegans Hypothetical
protein K03A1.2a protein.
Length = 586
Score = 34.3 bits (75), Expect = 0.091
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = +3
Query: 471 RDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAF 650
R F + L E+S+ NC I LP ++FE L L L +R L+
Sbjct: 293 RKEMFKGLDSLEELSLDNCNIENLPADIFEYLPKLVKLSLR--------ENPLEEIPAVV 344
Query: 651 NGLRXLHTLDLAYNNIXKIPSDLF 722
L+ L +DL+ N+ +I F
Sbjct: 345 AHLKSLKDIDLSVTNLTEIRDHAF 368
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +3
Query: 507 EISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLRXLHTLDLA 686
EI ++ +I +P + F+ L+ L L + N + AF GL LHTL L
Sbjct: 291 EIRLEQNQISSIPSHSFKNLKNLTRLDLSK-------NIITEIQPKAFLGLHNLHTLVLY 343
Query: 687 YNNIXKIPSDLF 722
NNI + SD F
Sbjct: 344 GNNITDLKSDTF 355
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +3
Query: 507 EISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLRXLHTLDLA 686
EI ++ +I +P + F+ L+ L L + N + AF GL LHTL L
Sbjct: 291 EIRLEQNQISSIPSHSFKNLKNLTRLDLSK-------NIITEIQPKAFLGLHNLHTLVLY 343
Query: 687 YNNIXKIPSDLF 722
NNI + SD F
Sbjct: 344 GNNITDLKSDTF 355
>AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical
protein T21D12.9c protein.
Length = 737
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 483 FGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLR 662
F ++ L +S+ + RL +F GLK L + + N+ T G GL
Sbjct: 239 FNQLPSLQNVSLARNDVYRLDDGMFYACEGLKHLNLST-------NRVQAVTEGWMFGLT 291
Query: 663 XLHTLDLAYNNI 698
L LDL+YN I
Sbjct: 292 SLEVLDLSYNQI 303
>AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical
protein T21D12.9a protein.
Length = 881
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 483 FGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLR 662
F ++ L +S+ + RL +F GLK L + + N+ T G GL
Sbjct: 239 FNQLPSLQNVSLARNDVYRLDDGMFYACEGLKHLNLST-------NRVQAVTEGWMFGLT 291
Query: 663 XLHTLDLAYNNI 698
L LDL+YN I
Sbjct: 292 SLEVLDLSYNQI 303
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 32.3 bits (70), Expect = 0.37
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +3
Query: 483 FGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLR 662
F M+ L ++SI+N + L + F L L +L + G NK D G F+ L
Sbjct: 361 FDGMKNLQQLSIRNNTLTALDASSFAQLAHLTTLDL-------GHNKIHDIEEGTFDKLS 413
Query: 663 XLHTLDLAYNNIXKIPSDLF 722
L LDL+ N I + +F
Sbjct: 414 KLFWLDLSNNKISGFKTSVF 433
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 296 KRRAHHKTKEYCVYYHFNKNCVHFIFVTCQNKVILN-ESRDG 174
K+R H YC+ YH + + H V QNK I+ +SR G
Sbjct: 354 KQRFHTGHVPYCLKYHPDDDKNHMFLVGMQNKKIIQWDSRSG 395
>AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical
protein F32B5.7 protein.
Length = 792
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 278 CDGRGAYGSTGRCRCVFSCGKCGRYGG 358
CDG A G+ G C +CG CG GG
Sbjct: 759 CDG-AACGACGACGACGACGGCGGCGG 784
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 278 CDGRGAYGSTGRCRCVFSCGKCGRYGG 358
C GA G+ G C CG CG GG
Sbjct: 764 CGACGACGACGACGGCGGCGGCGGCGG 790
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/79 (26%), Positives = 39/79 (49%)
Frame = +3
Query: 483 FGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTLGAFNGLR 662
F L + + +C I R+ + ++ ++ + + S N IN DF AF+ L
Sbjct: 314 FQHAPSLIRLELFDCSISRIEPKSLQKVQHIQVILL-SRNQITQINAVDDF---AFSQLP 369
Query: 663 XLHTLDLAYNNIXKIPSDL 719
L +LDL+ N + +PS++
Sbjct: 370 MLTSLDLSSNRLESLPSNV 388
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +3
Query: 564 LRGLKSLKIRSMNNEWGINKELDFTLGAFNGLRXLHTLDLAYNNIXKIPSD 716
LR L SL++ ++ N+ DF + L+ L TLDL++NN+ +P+D
Sbjct: 186 LRYLTSLEVLKISR----NRVEDFPAELCSSLK-LRTLDLSHNNLSYLPAD 231
>AY204190-1|AAO39194.1| 382|Caenorhabditis elegans nuclear receptor
NHR-106 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 283 WARRLRKHRTMQMRVFVWQVWTVW--WSAMYGRCRRTEM 393
W RL+ T+ MR+ + + T+W WS MY + +E+
Sbjct: 176 WLTRLQDFCTLPMRIQMQLLQTIWHVWSRMYKVVKSSEL 214
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +3
Query: 459 ESTLRDHHFGKMQGLAEI---SIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKEL 629
E+ + D G + GL ++ ++ N +++RLPGN + L LK+L + S N +
Sbjct: 222 ENLIGDIEEGALYGLEKLETLNLTNNQLVRLPGNTW-SLPALKTLDLSS-------NLFV 273
Query: 630 DFTLGAFNGLRXLHTLDLAYNNIXK 704
+F+GL L L+++++ K
Sbjct: 274 SLETASFDGLPALQYLNISHSRNLK 298
>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
family protein 4 protein.
Length = 1802
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 37 GITRLRCYVAHLVLLYSLLTFIIVVIATFPH 129
G+++ +VAH ++ Y+ LTF ++V+ H
Sbjct: 357 GLSQFINWVAHFIINYAKLTFAVIVLTILMH 387
>AF022978-5|AAG24181.2| 382|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 106 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +1
Query: 283 WARRLRKHRTMQMRVFVWQVWTVW--WSAMYGRCRRTEM 393
W RL+ T+ MR+ + + T+W WS MY + +E+
Sbjct: 176 WLTRLQDFCTLPMRIQMQLLQTIWHVWSRMYKVVKSSEL 214
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +3
Query: 459 ESTLRDHHFGKMQGLAEI---SIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKEL 629
E+ + D G + GL ++ ++ N +++RLPGN + L LK+L + S N +
Sbjct: 222 ENLIGDIEEGALYGLEKLETLNLTNNQLVRLPGNTW-SLPALKTLDLSS-------NLFV 273
Query: 630 DFTLGAFNGLRXLHTLDLAYNNIXK 704
+F+GL L L+++++ K
Sbjct: 274 SLETASFDGLPALQYLNISHSRNLK 298
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/87 (21%), Positives = 35/87 (40%)
Frame = +3
Query: 462 STLRDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTL 641
+ +R + F + L+ +S+ I + G + L L + N + N
Sbjct: 218 NAIRQNDFVNLTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLNENNLQTLDN------- 270
Query: 642 GAFNGLRXLHTLDLAYNNIXKIPSDLF 722
G + L LDL++NN I ++F
Sbjct: 271 GVLEQFKQLQVLDLSFNNFTDITKEMF 297
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 437 PL*PAPVREHPQGSSFWKDARSSGDIDSKLQDIAT 541
P+ P PV EH + S WK R SG++ ++ Q + T
Sbjct: 955 PVGPMPVIEHAELS--WKSVRISGEVCNQTQRLKT 987
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 337 QVWTVWWSAMYGRCRRTEMSSVRCTRMARSGLQ 435
+++ W A Y C R E++S C+R+ R ++
Sbjct: 340 EIFLAWLEATYLLCTRHELNSQECSRIRREFIE 372
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/87 (21%), Positives = 35/87 (40%)
Frame = +3
Query: 462 STLRDHHFGKMQGLAEISIQNCKILRLPGNVFEGLRGLKSLKIRSMNNEWGINKELDFTL 641
+ +R + F + L+ +S+ I + G + L L + N + N
Sbjct: 218 NAIRQNDFVNLTSLSMLSLNGNNISEIKGGALQNTPNLHYLYLNENNLQTLDN------- 270
Query: 642 GAFNGLRXLHTLDLAYNNIXKIPSDLF 722
G + L LDL++NN I ++F
Sbjct: 271 GVLEQFKQLQVLDLSFNNFTDITKEMF 297
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 337 QVWTVWWSAMYGRCRRTEMSSVRCTRMARSGLQ 435
+++ W A Y C R E++S C+R+ R ++
Sbjct: 340 EIFLAWLEATYLLCTRHELNSQECSRIRREFIE 372
>Z93379-3|CAB07590.1| 282|Caenorhabditis elegans Hypothetical
protein F21H7.4 protein.
Length = 282
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 366 HCTPPYRPHLPHENTHLHRPVLP*APRP 283
H PP+RPH P HRP P PRP
Sbjct: 76 HHRPPHRPHRPPHRP--HRPPRP-PPRP 100
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
protein F43C1.1 protein.
Length = 1036
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 618 NKELDFTLGAFNGLRXLHTLDLAYNNIXKIPSDLF 722
N +LD + + L+ L +LD+++N +IP LF
Sbjct: 252 NNQLDTLPDSISELQNLQSLDISFNQFSQIPPCLF 286
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,631
Number of Sequences: 27780
Number of extensions: 390226
Number of successful extensions: 1272
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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