Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N07
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid elon...    31   0.99 
Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U41277-3|AAA82474.1|  154|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    29   3.0  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    28   5.3  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    28   5.3  
AF098985-5|AAC67418.1|   99|Caenorhabditis elegans Hypothetical ...    28   5.3  
U41277-4|AAA82475.1|  277|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid
           elongation protein 3 protein.
          Length = 320

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 596 NPKYVCEIYRLLLERNVLGDVGKSTSDLLRHWWGSGDSITSGLVSILV 453
           NPKY  E Y + L      D  +ST+ +  HW+    SIT+ +V + V
Sbjct: 7   NPKYGLENYSIFLPFETSFDAFRSTTWMQNHWY---QSITASVVYVAV 51


>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +3

Query: 369 PPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARALAYIAKN 548
           PP  P++   S     P   P ++ +V + +   PT    P  PP P  I+ A A  A  
Sbjct: 321 PPPPPLLMNTSIVHQLPAEAPSTIQFV-EPSAAPPTNIPPPPPPPPPMVISSAAASFAAP 379

Query: 549 IP 554
            P
Sbjct: 380 AP 381


>U41277-3|AAA82474.1|  154|Caenorhabditis elegans Hypothetical
           protein C06E4.4 protein.
          Length = 154

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 270 NEINPDGSYTYFYETNNGIAA-QEQGVPRNLGGNPPAVP 383
           N +NP    T F E   G+++ Q Q    N+G NP A+P
Sbjct: 98  NTVNPGVVATGFMEVATGLSSEQSQTFYDNVGSNPSAIP 136


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = +3

Query: 363 GNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARAL 530
           G  P  PVV QG   W+  +  P      A E    PT  A    PP P Q A  L
Sbjct: 70  GQDPTTPVVPQGGTGWSKSDN-PNG----AAEPPQTPTNQAPAVPPPPPPQPANDL 120


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 1/129 (0%)
 Frame = +3

Query: 138 STYRPFVSVTTPTPFLPIP-ISSVAPVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYET 314
           ST  P  +VT PT   P+P  ++  P           G  T   G    P  + T    T
Sbjct: 476 STMSPPTTVTVPTTPTPVPTTTNTPPANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTT 535

Query: 315 NNGIAAQEQGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPT 494
                  +  VP +     P V          T+     ++   V       P+   +PT
Sbjct: 536 QTTAPVTKPTVPSSTTQTAPPVTTPTSQPPVTTTSLLTTLTTPTVPVTTTVVPSSATVPT 595

Query: 495 SPPVPEQIA 521
           +PP    +A
Sbjct: 596 TPPTTVTVA 604


>U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical
           protein F18A1.7 protein.
          Length = 266

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 644 QRQYCFHLXLFIRCKPNPKYVCEIYRLLLER 552
           + QYC H  LF +   + +Y+C    +L ER
Sbjct: 96  KEQYCDHNKLFAKASSSVEYMCATKHVLFER 126


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +3

Query: 279  NPDGSYTYFYETNNGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 455
            N DG  + F E   G +    G P   L    P+   ++ G +S +SP+    S +Y   
Sbjct: 1535 NTDGGASPFNE--GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1592

Query: 456  ENGYQPTGNAIPTSPPVPEQIARALAY 536
               Y PT  A   SP  P     + +Y
Sbjct: 1593 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1619



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 366  NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 500
            +P A       S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1600 SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +3

Query: 279  NPDGSYTYFYETNNGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 455
            N DG  + F E   G +    G P   L    P+   ++ G +S +SP+    S +Y   
Sbjct: 1542 NTDGGASPFNE--GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1599

Query: 456  ENGYQPTGNAIPTSPPVPEQIARALAY 536
               Y PT  A   SP  P     + +Y
Sbjct: 1600 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1626



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 366  NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 500
            +P A       S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1607 SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652


>AF098985-5|AAC67418.1|   99|Caenorhabditis elegans Hypothetical
           protein C08G5.5 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 417 PEGVP--ISVNYVADENGYQPTGNAIPTSPPVPEQIARALAYIA 542
           P G+P  +S +Y A      PT    P++PP+P   +   AY A
Sbjct: 44  PSGLPPMVSESYSAPYAQAPPTSTGYPSAPPMPRPSSPPPAYSA 87


>U41277-4|AAA82475.1|  277|Caenorhabditis elegans Hypothetical
           protein C06E4.3 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 270 NEINPDGSYTYFYETNNGIAAQE-QGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNY 446
           N +NP    T F+E+  G++ +E Q     +G N  A+P    G      PE +  ++ +
Sbjct: 189 NTVNPGVVATGFHESCTGLSTEESQKFYDKVGANKSAIPCGFSG-----RPEHIAKAIAF 243

Query: 447 VADEN 461
           +AD +
Sbjct: 244 LADRD 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,457
Number of Sequences: 27780
Number of extensions: 350400
Number of successful extensions: 1204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)