Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N06
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    31   0.66 
SB_57587| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)                    28   6.2  
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)                       27   8.2  
SB_19226| Best HMM Match : I-set (HMM E-Value=0)                       27   8.2  
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_34188| Best HMM Match : Astacin (HMM E-Value=0)                     27   8.2  

>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 58  RKXTYTMTKVAIILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQGMS--NIQDMA 231
           ++ +  +T +  + L  A+V   +GA V N PN+  +N  SF+   +   M+  + +D+ 
Sbjct: 213 KQASLLLTSLESVALATASVLPTDGAVVKNTPNVL-LNMQSFNKEHMSGKMAYPSDEDLN 271

Query: 232 SKAG 243
            KAG
Sbjct: 272 EKAG 275


>SB_57587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/74 (24%), Positives = 28/74 (37%)
 Frame = +1

Query: 208 MSNIQDMASKAGFGPNMNGAAISTVVDSAGKKMTKLLISENGKISTMDXXXXXXXXXXXX 387
           M   Q    + GF  N   A    +   AG +    ++ E GK S +D            
Sbjct: 122 MDLTQKYTYRLGFSYNTTSALYLRLEGEAGSEKIVSVVEEWGKKSLLDGQSAPFTGSMAT 181

Query: 388 XX*RIHQEICIIML 429
              +IH ++C +ML
Sbjct: 182 MFRKIHGKVCNMML 195


>SB_43487| Best HMM Match : K-box (HMM E-Value=0.79)
          Length = 243

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 324 RKREDINHGFQQVKTAN*FYLKKIANSSRNLHNNVKD 434
           + +ED  +G++QV   +  Y  K  N++ N++NN ++
Sbjct: 183 KTKEDKVYGYEQVSQRDEDYTSKDINNNNNINNNRRE 219


>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
          Length = 346

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 336 DINHGFQQVKTAN*FYLKKIANSSRNLHNNVKDPSYVFYD*RKFYNIM 479
           D++ G   +  +    L K++ S ++L+ N+KDP   F +  K  +++
Sbjct: 228 DLSLGSDSIPASEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLL 275


>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1500

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 352  NPWLISSRFR*LAVSSFFSLRYLQPSKWLHRSC*AQN 242
            N WL+SS+   L  S+F+ L  L+P+   H    A+N
Sbjct: 1129 NDWLMSSKQEVLGSSTFYRLTGLKPATTYHVRVYARN 1165


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 352 NPWLISSRFR*LAVSSFFSLRYLQPSKWLHRSC*AQN 242
           N WL+SS+   L  S+F+ L  L+P+   H    A+N
Sbjct: 144 NDWLMSSKQEVLGSSTFYRLTGLKPATTYHVRVYARN 180


>SB_34188| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 844

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 91  IILLILAAVYGLEGAAVPNDPNIFPINANSFSPASLMQ 204
           II LILAA+YG+EG  +P  P   P       P  L+Q
Sbjct: 7   IIALILAALYGVEG--IPKKPKERPRKGRKI-PDRLLQ 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,062
Number of Sequences: 59808
Number of extensions: 275336
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)