Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N06
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    28   3.8  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    28   3.8  
At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical ...    27   6.7  
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa...    27   8.8  
At4g12760.1 68417.m02003 expressed protein  ; expression support...    27   8.8  

>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 117 HGSQNQKNNCNLRHCISXFADVQK 46
           HG  N  + C L HC+  F + +K
Sbjct: 265 HGGYNIMSGCTLEHCLKKFLNTEK 288


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 117 HGSQNQKNNCNLRHCISXFADVQK 46
           HG  N  + C L HC+  F + +K
Sbjct: 265 HGGYNIMSGCTLEHCLKKFLNTEK 288


>At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical to
           fatty acid elongase 1 [GI:881615]
          Length = 506

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 513 GPFYVSVSIKFA*YYKTFVSHKIRRKDL*HYY 418
           GP  + +S KF  ++ TFV+ K+ +  + HYY
Sbjct: 347 GPLILPLSEKFL-FFATFVAKKLLKDKIKHYY 377


>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 426

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 326 SLISSFVIFFPALSTTVEMAAPFMLGPKPAFEAMSWMFDMPCIKLAGEKLLAFIGN 159
           S++S+  I    +ST +E +  F   P P+ EA + + D       GE  +  IGN
Sbjct: 19  SILSASNIIQAPISTLLEYSGLFRARPSPSHEAETLVSDDSSGLSNGEVAIRIIGN 74


>At4g12760.1 68417.m02003 expressed protein  ; expression supported
           by MPSS
          Length = 227

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 321 QRKREDINHGFQQVKTAN*FYLKKIANSSRNLHNN 425
           ++++E IN  FQ + +     LKKI +SSRNL  N
Sbjct: 28  RKQKEIINCAFQDIVSDE---LKKIEDSSRNLSGN 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,915,757
Number of Sequences: 28952
Number of extensions: 201547
Number of successful extensions: 436
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)