Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N03
(653 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 267 1e-70
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 261 9e-69
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 218 8e-56
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 203 3e-51
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 175 6e-43
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 120 1e-39
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 162 6e-39
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 159 7e-38
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 157 2e-37
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 143 3e-33
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 137 2e-31
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 123 3e-27
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 120 4e-26
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 105 9e-22
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 95 2e-18
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 94 3e-18
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 91 2e-17
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 87 3e-16
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 86 6e-16
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 83 6e-15
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 82 1e-14
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 80 4e-14
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 77 5e-13
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 77 5e-13
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 73 8e-12
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 73 8e-12
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 72 1e-11
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 70 4e-11
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 68 2e-10
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 64 3e-09
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 62 9e-09
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 62 9e-09
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 61 3e-08
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 60 5e-08
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 53 7e-06
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 50 4e-05
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 48 2e-04
UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large rib... 48 3e-04
UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32; Bacter... 46 6e-04
UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12; Bacter... 45 0.002
UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3; Bacteri... 42 0.010
UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;... 41 0.030
UniRef50_Q7XYN9 Cluster: Ribosomal protein rpL13; n=1; Bigelowie... 41 0.030
UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42; Lactob... 40 0.039
UniRef50_Q6G3I6 Cluster: 50S ribosomal protein L13; n=33; Bacter... 40 0.039
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 40 0.069
UniRef50_Q2IA19 Cluster: Chloroplast 50S ribosomal protein L13; ... 40 0.069
UniRef50_Q67JX6 Cluster: 50S ribosomal protein L13; n=59; Bacter... 39 0.091
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 38 0.21
UniRef50_Q1IU84 Cluster: 50S ribosomal protein L13; n=17; Bacter... 37 0.37
UniRef50_Q12487 Cluster: 54S ribosomal protein L23, mitochondria... 37 0.49
UniRef50_Q82UK0 Cluster: 50S ribosomal protein L13; n=30; Bacter... 36 0.64
UniRef50_Q7WFC3 Cluster: 50S ribosomal protein L13; n=265; Bacte... 36 0.85
UniRef50_Q9SYL9 Cluster: 50S ribosomal protein L13, chloroplast ... 35 1.5
UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2; ... 35 2.0
UniRef50_O46915 Cluster: Chloroplast 50S ribosomal protein L13; ... 35 2.0
UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage Barnyard... 34 2.6
UniRef50_Q9HKW8 Cluster: Transposase related protein; n=2; Therm... 34 3.4
UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1; Tr... 33 4.5
UniRef50_Q8KTT2 Cluster: 50S ribosomal protein L13; n=1; Candida... 33 6.0
UniRef50_O51314 Cluster: 50S ribosomal protein L13; n=3; Borreli... 33 6.0
UniRef50_Q60TB9 Cluster: Putative uncharacterized protein CBG205... 33 7.9
UniRef50_Q9RXY1 Cluster: 50S ribosomal protein L13; n=6; Bacteri... 33 7.9
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 267 bits (655), Expect = 1e-70
Identities = 117/203 (57%), Positives = 152/203 (74%)
Frame = +1
Query: 40 MXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 219
M G +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++L
Sbjct: 1 MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60
Query: 220 RKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 399
RKRCNVNPARGPFHFRAPS+I +K VRGMIPHKT+RG+ AL RLR +DG P P+D
Sbjct: 61 RKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRV 120
Query: 400 XXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT 579
L+ R YC VGRLSHE+GW Y+DV++ LE KRK K + + ++LK++T
Sbjct: 121 VVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLT 180
Query: 580 KDAGEKVSKATTPFTTIIQSYGY 648
A E ++KA PF II+SYGY
Sbjct: 181 VKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 261 bits (640), Expect = 9e-69
Identities = 117/203 (57%), Positives = 147/203 (72%)
Frame = +1
Query: 40 MXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 219
M G S K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FFRNK+K +++L
Sbjct: 1 MPGLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYL 60
Query: 220 RKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 399
RKRCNVNPARGPFHFRAPS++LWK VRGM+PHKT+RG NAL+RL+ Y+G P PFD
Sbjct: 61 RKRCNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRL 120
Query: 400 XXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT 579
CL+P R +C VGR++HE+GWKYRDVV LE KRK K+ + KKLK++T
Sbjct: 121 CVPTAMRQLCLRPDRKFCDVGRVAHEVGWKYRDVVNNLEAKRKIKSRLSYLHSKKLKKLT 180
Query: 580 KDAGEKVSKATTPFTTIIQSYGY 648
A V+ +++ YGY
Sbjct: 181 WKARTAVADKVKDQDAVLRKYGY 203
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 218 bits (533), Expect = 8e-56
Identities = 100/197 (50%), Positives = 132/197 (67%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 237
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INISG+ FRNKLK +FL+KR N
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 238 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 417
NP RGPFHFR+P++ILW+T+RGMIPHKT RG AL RL+ ++G PPP+D
Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123
Query: 418 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 597
LKPGR +C +GRL+ E+GW++ D+V +LE+KRK K+ A +K L + A
Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVA 183
Query: 598 VSKATTPFTTIIQSYGY 648
V+ T + YG+
Sbjct: 184 VASKTANIQKELDHYGF 200
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 203 bits (496), Expect = 3e-51
Identities = 93/184 (50%), Positives = 127/184 (69%)
Frame = +1
Query: 31 VVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 210
+V G S + IV+D R H+LGRL++++AK LL G +VVVVRCE+I +SG R K+K +
Sbjct: 1 MVSGSGISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYL 60
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 390
FLRKR N P+ GP HFRAPSKILW+T+RGMIPHKT+RG AL RL+ Y+G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKI 120
Query: 391 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 570
L+ G YC +G+LS E+GW + D +++LEDKRK +A +V YE++ K
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELEDKRKERA--QVTYERR-K 177
Query: 571 RITK 582
++ K
Sbjct: 178 QLAK 181
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 175 bits (427), Expect = 6e-43
Identities = 85/198 (42%), Positives = 120/198 (60%)
Frame = +1
Query: 55 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 234
+K +VID +GHLLGRLA+ +AK LL G ++VVVR E INISG+ FRN++K FL K N
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMN 134
Query: 235 VNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 414
NP RG HFRAPS+I W+ VRGM+PHKT +G AL RL+ ++G P P+D
Sbjct: 135 HNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDA 194
Query: 415 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 594
L+ R C +G LS +GW + ++ KLE+KR+ +A + ++KK+K+ E
Sbjct: 195 LKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARA--KTYHDKKVKQADARKKE 252
Query: 595 KVSKATTPFTTIIQSYGY 648
+ A + +GY
Sbjct: 253 LAAPALKAIKDKLAQFGY 270
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 120 bits (289), Expect(2) = 1e-39
Identities = 56/88 (63%), Positives = 70/88 (79%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 237
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INISGNF+RNKLK ++FL K+ N
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 238 NPARGPFHFRAPSKILWKTVRGMIPHKT 321
NP+RGP+ F+APS+I W T RGM+PHKT
Sbjct: 64 NPSRGPYRFQAPSRIFWWTARGMLPHKT 91
Score = 65.7 bits (153), Expect(2) = 1e-39
Identities = 29/72 (40%), Positives = 46/72 (63%)
Frame = +1
Query: 430 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 609
LKP R + ++GRL+H++GWKY+ V LE+ RK KA +K+L R+ K A + V K
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQLMRLWKQAKKNVEKK 157
Query: 610 TTPFTTIIQSYG 645
T +T ++++G
Sbjct: 158 TDKYTEFLKTHG 169
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 162 bits (394), Expect = 6e-39
Identities = 82/195 (42%), Positives = 117/195 (60%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
IVID +GH+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 423
RGPFHFRAP++I+ +T+RGMIP+KT RG +A+ RLR YDG PP
Sbjct: 64 LRGPFHFRAPAEIVRRTIRGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMAY 123
Query: 424 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVS 603
CL+P R C VGR++HEIGW++ V + E +R + K + ++ + +A EK +
Sbjct: 124 LCLRPERRRCEVGRVAHEIGWQHAADVERYEKRRLEECDKWYQDKIQIDKKIAEAAEKDA 183
Query: 604 KATTPFTTIIQSYGY 648
+ + YGY
Sbjct: 184 ELQR-INAELAKYGY 197
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 159 bits (385), Expect = 7e-38
Identities = 76/198 (38%), Positives = 112/198 (56%)
Frame = +1
Query: 55 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 234
+K IVID +GHL GRLA++++K LL+G VVVVR E I +SG R ++ + KR N
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMN 61
Query: 235 VNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 414
NP +GP+H+ +PS++ WKTVRGM+PHKT RG A R + Y+G P P+D
Sbjct: 62 TNPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAVVPEA 121
Query: 415 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 594
L G +C +G +IGWK+ +V++LE KR+ A + A +K+ A
Sbjct: 122 LKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELEAKRQTAASEYWAQKKEANSKFAAAKA 181
Query: 595 KVSKATTPFTTIIQSYGY 648
+ +I++ GY
Sbjct: 182 AANAQLGDLQQLIEATGY 199
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 157 bits (381), Expect = 2e-37
Identities = 83/197 (42%), Positives = 111/197 (56%), Gaps = 2/197 (1%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI+G RNK+K + +LRKR NP
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX-XXXX 420
+GPFH RAPS + +TVR M+P T+RG AL L Y+G PP
Sbjct: 85 TKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQR 144
Query: 421 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDA-GEK 597
C + R Y +G + +GWKY DVV LE R KA + + KL+ K A E
Sbjct: 145 HVCYRSERPYTVLGNMCKHVGWKYSDVVANLEKARVEKASRHHEKQAKLRDAWKSARKEA 204
Query: 598 VSKATTPFTTIIQSYGY 648
++K +++ +GY
Sbjct: 205 LAKMPKHNVEVLKKFGY 221
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 143 bits (347), Expect = 3e-33
Identities = 77/181 (42%), Positives = 104/181 (57%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 423
GPFH RAP +I + VRGMIP+KT RG +A L+ Y+G P + +
Sbjct: 65 RDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRC 124
Query: 424 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVS 603
+ R +GRLS +GWKY +VV +LE++RK ++ K +K + A EKV+
Sbjct: 125 VSIHTDRPTTKLGRLSTTMGWKYGNVVAQLEEQRKAESAKYFEAKKAAQDKRAAAIEKVN 184
Query: 604 K 606
K
Sbjct: 185 K 185
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 137 bits (332), Expect = 2e-31
Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 2/175 (1%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 237
K V+D + HLLGR+A++ AK +L+G+K++++R E +I+G RN K S +K+ N
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNT 61
Query: 238 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 417
NP RGPFHF++PSKIL++T++ MIPHKT RG AL+ L+ ++G P F
Sbjct: 62 NPRRGPFHFKSPSKILYQTIKRMIPHKTMRGSKALKNLKIFEGLPRIFSKIKKEKFFEAF 121
Query: 418 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDK--RKGKAVKRVAYEKKLKRI 576
+K R ++G++ +GWK R + + D+ GK V + E K RI
Sbjct: 122 RYKVIKNYRKTVNLGKVCEVLGWKNRKFIEQKSDQLAALGKVVLKKKKEIKKFRI 176
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 123 bits (297), Expect = 3e-27
Identities = 65/159 (40%), Positives = 86/159 (54%)
Frame = +1
Query: 31 VVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 210
+V G +V+D R H+L RLA++IAK LL G +VV
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLSRLASIIAKELLNGKRVV--------------------- 39
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 390
R N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 40 -----RMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRT 94
Query: 391 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 507
L+PG YC +G+LS E+GW Y D +R
Sbjct: 95 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 133
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 120 bits (288), Expect = 4e-26
Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
++ID G + G+LAA +AK+LLEG +V VV E+ G+ R K +L KRC VNP
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 423
RGPFHFR P L K +R MI +K RGK A+ RL TY+G P +
Sbjct: 67 RRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIPRELEGQPRYKVTCAFVK 126
Query: 424 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGK----AVKRVAYEKKLKRITKD 585
+ P R Y +G+L GWK+ + + L D+ K + ++++ +KK++ + D
Sbjct: 127 YTGNPNR-YVTLGKLLSMFGWKHAEAAKSLTDELKERESLASLQKKDLDKKIEELKTD 183
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 105 bits (252), Expect = 9e-22
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = +1
Query: 427 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 606
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+ K + +K+KR+TK A +K+ K
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRLTKKASKKIEK 63
Query: 607 ATTPFTTIIQSYGYN 651
P+T +I+SYGYN
Sbjct: 64 QVAPYTAVIKSYGYN 78
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 94.7 bits (225), Expect = 2e-18
Identities = 48/140 (34%), Positives = 72/140 (51%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 246
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 247 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXF 426
GP+H R P I+ + +RGM+P K GK A RLR Y G P +
Sbjct: 61 HGPYHPRRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSPGHLKSFEKRKLKGAEIT- 119
Query: 427 CLKPGRNYCHVGRLSHEIGW 486
+P NY + L +GW
Sbjct: 120 --RPTANYTTMADLGETVGW 137
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 93.9 bits (223), Expect = 3e-18
Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFRNKLKLMSFLRKRCNVN 240
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR N
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TN 60
Query: 241 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 420
P RGPF+ + +I+ +T+RGM+P KT+RG+ A RRL+ Y G P F +
Sbjct: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV 120
Query: 421 XFCLKPGRNYCHVGRLSHEIGWKY 492
+P Y VG ++ +G K+
Sbjct: 121 SRLSRP--KYVTVGEVAKFLGGKF 142
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 91.1 bits (216), Expect = 2e-17
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Frame = +1
Query: 52 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 231
+++ IV+D H+ GRL++ +AK+L +G++V +V CE+I SG + FL
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINS 69
Query: 232 NVNPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCPPPFDNXXXXXXX 408
+NP GP H+R P I+ K +R M+P+ + GK +++RLR Y G P +
Sbjct: 70 IINPKHGPVHYRRPDTIITKMIRQMLPYDRKPSGKESIKRLRAYIGSPKELKSLEKIQFE 129
Query: 409 XXXXXFCLKPGRNYCHVGRLSHEIGW 486
K NY +G L IGW
Sbjct: 130 KAKIK---KSPSNYTTMGELCRVIGW 152
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 87.4 bits (207), Expect = 3e-16
Identities = 50/141 (35%), Positives = 77/141 (54%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 246
VID +LGRLA+V+AK +L+G ++ V+ E+ I+G +N +K +L+K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPK 73
Query: 247 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXF 426
+GPF+ R P I + VRGM+P KT+RG+ A +RLR Y G P +
Sbjct: 74 KGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADM 133
Query: 427 CLKPGRNYCHVGRLSHEIGWK 489
Y +G LS E+G++
Sbjct: 134 SRLGHLWYVTLGELSEELGYQ 154
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 86.2 bits (204), Expect = 6e-16
Identities = 48/112 (42%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLK-LMSFLRKRCN 234
+AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I+G R K L ++ +
Sbjct: 6 EAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRWVEWKTY 65
Query: 235 VNP-ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 387
NP RGP + + P ++ + VRGM+P + G+++L+RL Y G P + N
Sbjct: 66 YNPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGRDSLKRLTVYVGLPDEYRN 117
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 83.0 bits (196), Expect = 6e-15
Identities = 43/102 (42%), Positives = 64/102 (62%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPA 246
VID GH+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKE 74
Query: 247 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 372
+GP+ R P +I +TVRGM+P K+ RG++A RRLR + G P
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 82.2 bits (194), Expect = 1e-14
Identities = 37/80 (46%), Positives = 54/80 (67%)
Frame = +1
Query: 52 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRC 231
+NK VID GH+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR
Sbjct: 8 NNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRV 67
Query: 232 NVNPARGPFHFRAPSKILWK 291
N NP RG FH R+P++++ K
Sbjct: 68 NTNPTRGAFHHRSPAEMVRK 87
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 80.2 bits (189), Expect = 4e-14
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
VID +G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGAT 59
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 423
GP+ + P +IL +T+RGM+P+K RG++A+ RL+ Y G P++
Sbjct: 60 EFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADAD 117
Query: 424 FCLKPGRNYCHVGRLSHEIGWKY 492
L Y +G +S ++G K+
Sbjct: 118 MRLLSSNKYVELGEVSQKMGSKF 140
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 76.6 bits (180), Expect = 5e-13
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFRNKLKLMSFLRK---- 225
+++D GH+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEW 75
Query: 226 RCNVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 372
R + NP + GP R P ++ + VRGM+P K+E G++AL+RLR Y P
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 76.6 bits (180), Expect = 5e-13
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Frame = +1
Query: 40 MXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN-FFRNKLKLMSF 216
+ G + IV+DG G ++GRLA+V+AK+LL G +V VV E+I +SG+ + +
Sbjct: 3 LAGGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTV 62
Query: 217 LRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 396
L + + + P R P ++ VRGM+P RG+ AL RLR Y G P D
Sbjct: 63 LGVKSHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVP---DELKG 119
Query: 397 XXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 489
+ +Y +G ++ ++GWK
Sbjct: 120 REFVRFPEADASRLSSHYIELGAVARQLGWK 150
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 72.5 bits (170), Expect = 8e-12
Identities = 43/173 (24%), Positives = 77/173 (44%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 237
K IVIDGR L+GRLA+ I +L +G + V+RC+ + SG + +++ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRT 62
Query: 238 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 417
NP +GP+ F PS +L K V+GM+ + + + ++ P +
Sbjct: 63 NPNKGPYFFSNPSSLLKKIVKGMLNKLNKSHTLLFKSVECFNDTPNRYIYNYKLFLKNSH 122
Query: 418 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRI 576
+ LKP + + + + GW+ R + K ++ KKL +
Sbjct: 123 KNYKLKPDSKFTKLYEILPKFGWQDRSSCTESNSKNGIRSTIYSFNSKKLNNL 175
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 72.5 bits (170), Expect = 8e-12
Identities = 36/103 (34%), Positives = 60/103 (58%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
+V+D R +LGR+++ +A+ +L+G V VV E+ I+GN + M R +
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITGN----EEATMETYHTRAELGS 65
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 372
GP++ + P +I + +RGM+P+KTE G+ AL +R Y G P
Sbjct: 66 DSGPYYPKRPDRIFKRAIRGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 71.7 bits (168), Expect = 1e-11
Identities = 37/103 (35%), Positives = 63/103 (61%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
++ D G +LGRLA+++A+ L G +V +V E+ I+G+ N +K +L+K +
Sbjct: 7 LIYDAEGLVLGRLASIVARNLKRGYRVKIVNAEKAIITGD--PNMVK-KEWLQKVKRGDY 63
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 372
+GPF+ + P IL + +RGM+P KT RG+ L+ ++ Y G P
Sbjct: 64 YKGPFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 70.1 bits (164), Expect = 4e-11
Identities = 34/103 (33%), Positives = 60/103 (58%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
+++D R ++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGR----EEQIVEKYEKRVDIGN 65
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 372
G F+ + P I +T+RGM+PHK +RG+ A +R Y G P
Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 67.7 bits (158), Expect = 2e-10
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 1/144 (0%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 237
+ ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG R L +
Sbjct: 8 QVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLF 67
Query: 238 NPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 414
NP R G R+P I+ +T+RGM+P K+ +G+ L+ ++ Y G P F+
Sbjct: 68 NPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS 126
Query: 415 XXXFCLKPGRNYCHVGRLSHEIGW 486
LK G+ Y V +S E+GW
Sbjct: 127 DVS-RLK-GK-YVTVEVVSKELGW 147
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 64.1 bits (149), Expect = 3e-09
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
+V++ ++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNP 61
Query: 244 AR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 372
+ GP + R P I+ + +RGM+P+K RG A ++++ G P
Sbjct: 62 KKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVP 105
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 62.5 bits (145), Expect = 9e-09
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +1
Query: 88 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF 264
+LGRLA+++AK L + +VRCE+I ISG R K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITF 59
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 62.5 bits (145), Expect = 9e-09
Identities = 32/108 (29%), Positives = 55/108 (50%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
I ID H+ GRL++ +AK LL G + +V ++ I+G R + + F R +
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITG---RKEFIIDKFNNLRNTGSI 58
Query: 244 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 387
+GP++ + +IL +++ M+P K G AL+R Y P +N
Sbjct: 59 RKGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLEN 106
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 60.9 bits (141), Expect = 3e-08
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFRNKLKLMSFLRK 225
+V D +LGRLA+ IAK LL EG+ +V+++ E ++G ++++ L + RK
Sbjct: 7 LVFDAHDKVLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP--KDRI-LADYDRK 63
Query: 226 RCNVNPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCP 372
+P +GPF R P IL +TVRGM+P+ K G+ A++ LR G P
Sbjct: 64 YKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTP 113
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 60.1 bits (139), Expect = 5e-08
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNP 243
+++D +LGR++ IAK+L G KV VV E+ ISG R + NP
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNP 67
Query: 244 AR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 372
R G R P I+ +TVRGM+P K + GK R L+ Y G P
Sbjct: 68 YRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIP 110
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 52.8 bits (121), Expect = 7e-06
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 469 SHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 648
+HE+GW+Y+ +V KLE+KRK K +K ++ + A EK T + +++ YGY
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAKTAVYDKVLEQYGY 60
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 50.4 bits (115), Expect = 4e-05
Identities = 28/106 (26%), Positives = 45/106 (42%)
Frame = +1
Query: 208 MSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 387
+ + + NP+ GPF F P I TV+ ++P+K + + L L+ +D +
Sbjct: 6 LDLFHRPLDTNPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETLEHLKVFDKTKQMIIS 65
Query: 388 XXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKR 525
CL G L++E GWKY+ V LE K+
Sbjct: 66 VQICVSEATSRFACL---------GYLTYESGWKYQVVTNTLEKKK 102
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +1
Query: 325 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 477
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large
ribosomal subunit; n=2; Ostreococcus|Rep: Plastid
ribosomal protein L13 large ribosomal subunit -
Ostreococcus lucimarinus CCE9901
Length = 218
Score = 47.6 bits (108), Expect = 3e-04
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGN------------KVVVVRCEQINISGNFFRNKLKL 207
+VID G LGRL+ V A L GN VVV+ ++I ++GN KL
Sbjct: 75 VVIDAAGLRLGRLSTVAATYLRGGNSGCYTPAFNMGVNVVVINADKIVVTGNKANQKLYY 134
Query: 208 MSFLRKR--CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 378
+R + H R P++++ K ++GM+P K G+ L+ Y G P
Sbjct: 135 TLGVRGKPGSMKEETYASLHARQPARVIEKAIKGMLP-KNRMGRETFTHLKVYAGADHP 192
>UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32;
Bacteria|Rep: 50S ribosomal protein L13 -
Prochlorococcus marinus (strain MIT 9313)
Length = 150
Score = 46.4 bits (105), Expect = 6e-04
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLM 210
++D LGRLA +A VL NK VVVV ++I +SGN KL
Sbjct: 18 LVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRR 77
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 378
R R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 78 HSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNA-LGRQLFRKLKVYRGPEHP 132
>UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12;
Bacteria|Rep: 50S ribosomal protein L13 - Synechococcus
sp. (strain CC9902)
Length = 150
Score = 44.8 bits (101), Expect = 0.002
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKLKLM 210
V+D LGRLA +A +L G+ VVVV E+I +SG + KL
Sbjct: 18 VVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQKLYRR 77
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 378
R R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 78 HSGRPGGMKVETFESLQERIPERIVEKAIKGMLPHNA-LGRQMYRKLKVYKGTEHP 132
>UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3;
Bacteria|Rep: 50S ribosomal protein L13 - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 143
Score = 42.3 bits (95), Expect = 0.010
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISG-----NF 186
K VID G LGRLAA I+++L NK VVVV +++ ++G
Sbjct: 14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73
Query: 187 FRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 366
+R LR+R R + P +IL + VRGM+P KT + L++LR Y G
Sbjct: 74 YRWHTGYPGGLRERSYRQMLR-----KRPEEILRQAVRGMMP-KTRLARRQLKKLRIYAG 127
Query: 367 CPPP 378
P
Sbjct: 128 PEHP 131
>UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;
n=1; Cyanidium caldarium|Rep: Putative uncharacterized
protein rpl13 - Cyanidium caldarium
Length = 143
Score = 40.7 bits (91), Expect = 0.030
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +1
Query: 88 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHF- 264
L+G+ + + + N V+++ Q+ I+GN +N K+ + +H
Sbjct: 37 LMGKNRSTYSYNSMSANFVIIINSRQVAITGN--KNTQKVYKRYSAKPGATKTESFYHLK 94
Query: 265 -RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 378
R P++IL + V+GM+P K+ GK L+ Y G P
Sbjct: 95 KRIPNRILEQAVKGMLP-KSVLGKKMFSHLKVYAGDSHP 132
>UniRef50_Q7XYN9 Cluster: Ribosomal protein rpL13; n=1; Bigelowiella
natans|Rep: Ribosomal protein rpL13 - Bigelowiella
natans (Pedinomonas minutissima) (Chlorarachnion
sp.(strain CCMP 621))
Length = 273
Score = 40.7 bits (91), Expect = 0.030
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL-K 204
IV+D + +LGRLA++ A +++ G VV++ +++ ++G + +KL K
Sbjct: 127 IVLDAQDQILGRLASLAATLVMGKWHPLYHPAMNMGAHVVIINADKVRVTGRKYTDKLYK 186
Query: 205 LMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 378
R + A R P +I+ ++GM+P KT G+ ++L Y G P
Sbjct: 187 RHVTGRPGSMKSEAFRDLQARIPERIVEVAIKGMLP-KTRLGREQFKQLHIYAGDENP 243
>UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42;
Lactobacillales|Rep: 50S ribosomal protein L13 -
Streptococcus mutans
Length = 148
Score = 40.3 bits (90), Expect = 0.039
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Frame = +1
Query: 28 FVVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQIN 171
++ K K ++D LGRL+AV+A VL NK V+V+ E++
Sbjct: 6 YMAKPGEVERKWYIVDATDVPLGRLSAVVASVLRGKNKPTFTPHTDTGDFVIVINAEKVK 65
Query: 172 ISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 351
++G NK+ + + G + +++ K+V+GM+PH T G+ +L
Sbjct: 66 LTGKKAANKIYYTHSMYPGGLKQISAGELRSKNAVRLIEKSVKGMLPHNT-LGRAQGMKL 124
Query: 352 RTYDG 366
+ + G
Sbjct: 125 KVFVG 129
>UniRef50_Q6G3I6 Cluster: 50S ribosomal protein L13; n=33;
Bacteria|Rep: 50S ribosomal protein L13 - Bartonella
henselae (Rochalimaea henselae)
Length = 154
Score = 40.3 bits (90), Expect = 0.039
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNK- 198
K ++ID +LGRLAA +A L +G+ V+V+ ++I+++G + +K
Sbjct: 14 KWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADKISLTGKKYTDKK 73
Query: 199 ----LKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 366
+ ++KR AR R P +++ K V MIP + G+ L+ LR Y G
Sbjct: 74 YYWHTGYIGGIKKR----TARQILEGRFPERVVEKAVERMIP-RGPLGRRQLKNLRVYAG 128
Query: 367 CPPP 378
P
Sbjct: 129 SQHP 132
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 39.5 bits (88), Expect = 0.069
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Frame = +1
Query: 64 IVIDGRGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 237
++I+ + +LGRLA+ + K LL + + +V+ QI ++GN ++NK S+ R
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK----SYRRHSGRP 56
Query: 238 NPARGPFHFRAPSK-ILWKTVRGMIPHKTERGKNALRRLR 354
+ + ++ K L ++GM+P K +G+ R++R
Sbjct: 57 GGMKIRYFYQIGGKRALEHAIKGMLP-KGVKGRQLWRKIR 95
>UniRef50_Q2IA19 Cluster: Chloroplast 50S ribosomal protein L13;
n=1; Pavlova lutheri|Rep: Chloroplast 50S ribosomal
protein L13 - Pavlova lutherii (Monochrysis lutheri)
Length = 225
Score = 39.5 bits (88), Expect = 0.069
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKLKLM 210
VID G LGR+A IAK L+ G+ V+V+ +++ ISG F K
Sbjct: 73 VIDAEGMRLGRMATEIAKRLMGKHKVTFFPGSNMGDYVIVINADKVVISGAKFYQKEYFR 132
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 366
R + R P +I+ K V+GM+P K G+ R L+ + G
Sbjct: 133 HSGRPGGVTVESFEQLQARIPERIVEKAVKGMLP-KGPLGREQFRHLKVFAG 183
>UniRef50_Q67JX6 Cluster: 50S ribosomal protein L13; n=59;
Bacteria|Rep: 50S ribosomal protein L13 -
Symbiobacterium thermophilum
Length = 143
Score = 39.1 bits (87), Expect = 0.091
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLLE------------GNKVVVVRCEQINISGNFFRNKL 201
K V+D G LGRLA+ +A +L G+ V++V E+I ++G +K+
Sbjct: 15 KWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVTGKKVTDKV 74
Query: 202 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 378
R P ++L ++GM+PH G+ R+L+ Y G P
Sbjct: 75 YYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLPH-NRLGRQMYRKLKVYAGPEHP 132
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 37.9 bits (84), Expect = 0.21
Identities = 24/75 (32%), Positives = 37/75 (49%)
Frame = -1
Query: 347 LLRAFLPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEIL 168
+LR F R+ L FHR L+W+ R+G + + + +S S F+KK+P
Sbjct: 1 MLRYFSQRNSLAACSSSGCFHR-----LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGR 55
Query: 167 ICSQRTTTTLFPSRR 123
+ SQ T+ P RR
Sbjct: 56 VISQSTSAFWLPFRR 70
>UniRef50_Q1IU84 Cluster: 50S ribosomal protein L13; n=17;
Bacteria|Rep: 50S ribosomal protein L13 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 37.1 bits (82), Expect = 0.37
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Frame = +1
Query: 52 SNKAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRN 195
+ K V+D G LGRLA+ +A++L G+ VVV+ E+I I+G N
Sbjct: 11 ARKWFVVDADGQTLGRLASRVARILSGKDNPKYTPFIDTGDHVVVINAEKIKITGLKADN 70
Query: 196 KLKLMSFLRKRCNVNPARGPFHF-RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 372
K K + + R P IL ++GM+P K++ GK +L+ Y G
Sbjct: 71 K-KYYHYSGYPGGMKEEEFLKRLERRPELILETAIKGMLP-KSKLGKAMGGKLKVYRGAD 128
Query: 373 PP 378
P
Sbjct: 129 HP 130
>UniRef50_Q12487 Cluster: 54S ribosomal protein L23, mitochondrial
precursor; n=12; Saccharomycetales|Rep: 54S ribosomal
protein L23, mitochondrial precursor - Saccharomyces
cerevisiae (Baker's yeast)
Length = 163
Score = 36.7 bits (81), Expect = 0.49
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 133 GNKVVVVRCEQINISGNFFRNKLKLMSFLRK-RCNVNPARGPFHFRAPSKILWKTVRGMI 309
G+ VVV C++I ++G F K R + + + +IL K V GM+
Sbjct: 54 GDYVVVTNCQKIRVTGKKFEQKTYWSHSGRPGQLKLQTMNKVVADKGFGEILKKAVSGML 113
Query: 310 PHKTERGKNALRRLRTYDGCPPPF 381
P K + K L RL+ +DG P+
Sbjct: 114 P-KNKLRKQRLDRLKVFDGSENPY 136
>UniRef50_Q82UK0 Cluster: 50S ribosomal protein L13; n=30;
Bacteria|Rep: 50S ribosomal protein L13 - Nitrosomonas
europaea
Length = 144
Score = 36.3 bits (80), Expect = 0.64
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)
Frame = +1
Query: 28 FVVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQIN 171
F K ++ V+D +LGRLAA IA L G+ +VV+ +++
Sbjct: 4 FSAKPHEVRHEWFVVDATDKVLGRLAAAIAHRLRGKHKPIYTPHVDTGDYIVVINADKLR 63
Query: 172 ISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRL 351
++GN +K H R P++ L K V+GM+P K G +++L
Sbjct: 64 VTGNKAEDKKYYRHSGYPGGIYETTFKKMHERFPTRPLEKAVKGMLP-KGPLGYAMIKKL 122
Query: 352 RTYDGCPPP 378
+ Y G P
Sbjct: 123 KIYAGDTHP 131
>UniRef50_Q7WFC3 Cluster: 50S ribosomal protein L13; n=265;
Bacteria|Rep: 50S ribosomal protein L13 - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 142
Score = 35.9 bits (79), Expect = 0.85
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Frame = +1
Query: 28 FVVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQIN 171
FV K VID +G +LGR+A+ +A L G+ +V++ I
Sbjct: 4 FVAKPHEVKRDWFVIDAKGKVLGRVASEVAHRLRGKHKPEFTPHVDTGDYIVIINAADIV 63
Query: 172 ISGNFFRNKLKLMSFLRKRCNVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRR 348
++GN ++K K + R P + + K V+GM+P K G +++
Sbjct: 64 VTGNKAQDK-KYFRHTTYPGGIRETNFEKMQQRFPGRAIQKAVKGMLP-KGPLGYAMIKK 121
Query: 349 LRTYDGCPPP 378
L+ Y G P
Sbjct: 122 LKVYAGAEHP 131
>UniRef50_Q9SYL9 Cluster: 50S ribosomal protein L13, chloroplast
precursor; n=47; cellular organisms|Rep: 50S ribosomal
protein L13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 241
Score = 35.1 bits (77), Expect = 1.5
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIA-----KVLLE-------GNKVVVVRCEQINISGNFFRNKLKLM 210
V+D +LGRLA+ IA K L G V+VV E++ +SG KL
Sbjct: 107 VVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRR 166
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 384
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 167 HSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223
>UniRef50_Q4QG46 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1445
Score = 34.7 bits (76), Expect = 2.0
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -3
Query: 195 VPKEVARDIDLFAANHNN-----FVPFEKDLGDDCRQTAQQMTTAIDHYGLI 55
VP ++ R+ HNN FVPF ++ +D QT QQ+ +A+ H GL+
Sbjct: 271 VPADMNRNATSNMKGHNNGDPGDFVPFAREEKEDPIQTTQQLYSAVCHAGLV 322
>UniRef50_O46915 Cluster: Chloroplast 50S ribosomal protein L13;
n=4; Eukaryota|Rep: Chloroplast 50S ribosomal protein
L13 - Guillardia theta (Cryptomonas phi)
Length = 143
Score = 34.7 bits (76), Expect = 2.0
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Frame = +1
Query: 58 KAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKL 201
K +ID LGRLA+ AK L+ N +V++ ++I ++GN +K
Sbjct: 15 KWFIIDATDKNLGRLASETAKTLVGKYDPLYAPNVNPKNIIVIINADKIRVTGNKKFDKF 74
Query: 202 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 381
+ R P +IL K V+G++P K G+ L+ Y G P
Sbjct: 75 YYRHSGQVGGLTIETFNELQSRLPGRILEKAVKGILP-KGPLGRELFNNLKVYAGSSHPH 133
Query: 382 D 384
+
Sbjct: 134 E 134
>UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage
Barnyard|Rep: Gp80 - Mycobacterium phage Barnyard
Length = 1111
Score = 34.3 bits (75), Expect = 2.6
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Frame = +1
Query: 433 KPGRNYCHVG-----RLSHEI--GWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT-KDA 588
KP R C G +LS EI GWKYR R +RK + VKR+ YE K+ IT KD
Sbjct: 296 KPLRFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKI--ITDKDF 353
Query: 589 GE 594
G+
Sbjct: 354 GD 355
>UniRef50_Q9HKW8 Cluster: Transposase related protein; n=2;
Thermoplasmatales|Rep: Transposase related protein -
Thermoplasma acidophilum
Length = 350
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +1
Query: 457 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 606
+G+ + I KY+ + +KL+ K+K K +K++ + + RI +D KVSK
Sbjct: 157 LGKKAEHIHNKYKAIRKKLQKKKKYKLLKKI--KDRESRIVRDLNHKVSK 204
>UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1;
Tribolium castaneum|Rep: Gustatory receptor candidate 8
- Tribolium castaneum (Red flour beetle)
Length = 379
Score = 33.5 bits (73), Expect = 4.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 181 NFFRNKLKLMSFLRKRCNVNPARGPFHFRAP--SKILWKTVRGMI 309
N+ + ++ +SF K CN+ P+ F P K LWK ++G++
Sbjct: 5 NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49
>UniRef50_Q8KTT2 Cluster: 50S ribosomal protein L13; n=1; Candidatus
Tremblaya princeps|Rep: 50S ribosomal protein L13 -
Tremblaya princeps
Length = 124
Score = 33.1 bits (72), Expect = 6.0
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVL------------LEGNKVVVVRCEQINISGNFFRNKLKLM 210
V+D RG +LGRLA +A +L N V V+ CE + ISG+ K+
Sbjct: 8 VLDARGMVLGRLAVTVAGLLRGKYKASYAHNAAPHNAVTVLNCEHVRISGSKAVGKVYYR 67
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGK 333
R+P+ +L V GM+P R +
Sbjct: 68 HSGHPGGLRRTKLHDLMLRSPATVLRAAVHGMLPRNRLRDR 108
>UniRef50_O51314 Cluster: 50S ribosomal protein L13; n=3; Borrelia
burgdorferi group|Rep: 50S ribosomal protein L13 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 146
Score = 33.1 bits (72), Expect = 6.0
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 12/123 (9%)
Frame = +1
Query: 34 VKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLLE------------GNKVVVVRCEQINIS 177
+K K VID +LG++A + K+L G+ V+++ ++ ++
Sbjct: 12 IKPKTVEKKWYVIDAADRILGKVAVDVVKILRGKHKAYYTPHQDLGDNVIIINASKVKLT 71
Query: 178 GNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRT 357
G ++ KL + R P L ++GM+P K G+N R L+
Sbjct: 72 GKKYQQKLYYRHSRYPGGLYSDTFRTLSERKPCAPLEIAIKGMLP-KGPLGRNLFRNLKV 130
Query: 358 YDG 366
+ G
Sbjct: 131 FSG 133
>UniRef50_Q60TB9 Cluster: Putative uncharacterized protein CBG20539;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG20539 - Caenorhabditis
briggsae
Length = 668
Score = 32.7 bits (71), Expect = 7.9
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = -2
Query: 520 CLQAYEQHHGISIQFHGT-VCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHM--YV 350
CL Y HHG Q HGT HD + H E GTHH Y
Sbjct: 450 CLAYYGTHHGTHDQSHGTHGGYHDPAHHGTHHATHYESHGTHGGYHDPAHHGTHHATHYE 509
Query: 349 AS*EHSCHALFCVGSY 302
+ H H+L G++
Sbjct: 510 SHGTHGHHSLAYYGTH 525
>UniRef50_Q9RXY1 Cluster: 50S ribosomal protein L13; n=6;
Bacteria|Rep: 50S ribosomal protein L13 - Deinococcus
radiodurans
Length = 174
Score = 32.7 bits (71), Expect = 7.9
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Frame = +1
Query: 13 PMLFRFVVKMXGFSNKA---IVIDGRGHLLGRLAAVIAK------------VLLEGNKVV 147
P+L F VK N +V+D G LGRLA +IA +++G+ VV
Sbjct: 22 PLLRSFKVKTYIPKNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVV 81
Query: 148 VVRCEQINISGNFFRNKL-KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTE 324
V+ Q+ ++G +K+ + + AR + P +++ V GM+P K
Sbjct: 82 VINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALS-KHPERVIEHAVFGMLP-KGR 139
Query: 325 RGKNALRRLRTYDG 366
+G+ RL+ Y G
Sbjct: 140 QGRAMHTRLKVYAG 153
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,165,891
Number of Sequences: 1657284
Number of extensions: 13543750
Number of successful extensions: 36900
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 35632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36851
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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