Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N03
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.62
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 29 2.5
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2) 29 4.4
SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14) 29 4.4
SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34) 29 4.4
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43) 28 5.8
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 28 7.6
SB_42304| Best HMM Match : NHL (HMM E-Value=0) 28 7.6
>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 44.8 bits (101), Expect = 6e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 304 MIPHKTERGKNALRRLRTYDGCPPPFD 384
MIPHKT++G A+ R++ +DG PPP+D
Sbjct: 1 MIPHKTKKGTEAMNRMKVFDGVPPPYD 27
>SB_46391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 35.5 bits (78), Expect = 0.038
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFRNKLKLM 210
+IDGR + GRLA I ++L G+ VVV+ + I +SG + NKL
Sbjct: 20 LIDGRDQICGRLAGYIGQILQGKTKPIYHHAEDVGDYVVVINTKHIVLSGTKWDNKLYRH 79
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 381
H + ++ILW+ V GM+P K ++RL ++ P+
Sbjct: 80 HTGYPGGLKEILAKDLHRKDGTRILWRAVNGMLP-KNNLRPTWMKRLYLFEDEHHPY 135
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.5 bits (68), Expect = 0.62
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 71 SMAVVICWAVWRQSSPRSFSKGTKLLWFAANKSISLA 181
SM+V +C ++W + P F +L+W+ + S+S++
Sbjct: 265 SMSVSLCQSIWYHTHPSVFVSLGQLIWYNTHPSVSVS 301
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +1
Query: 436 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 609
PG C VG+L H W + R L R+ + ++ A + + +G+ S++
Sbjct: 866 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAAAGGRTADQGERSGDSASRS 923
>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 470 PMKLDGNTVMLFVSLKTRGRARLL--RELPMKRNLRGSPRMLVRR 598
P K +GNT V ++ GR + L R +P++ N G P+ LV+R
Sbjct: 1114 PGKAEGNTDKRIVPVENNGRIKQLDKRIIPVENN--GRPKQLVKR 1156
>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
Length = 622
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 436 PGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVA 552
PG C VG+L H W + R L R+ + ++ A
Sbjct: 407 PGEQLCLVGQLGHRARWSSSVIDRPLHTGRRRDSARKAA 445
>SB_39792| Best HMM Match : Usp (HMM E-Value=1.2e-14)
Length = 271
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 427 CLKPGRNYCHVGRL---SHEIGWKYRDVVRKL--EDKRKGKAVKRVAYEKKLKRITKDAG 591
C KPG+++ HV + H ++ D R + + K A+K +Y KLK + +D G
Sbjct: 106 CYKPGQDFLHVVHVLNRPHIFSSRHHDAYRAIIHDVNEKANALKD-SYISKLKALVQDEG 164
>SB_6713| Best HMM Match : Response_reg (HMM E-Value=0.34)
Length = 225
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -1
Query: 248 RAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTL 138
R G+ + + ++ ++ LFL PE++ R TT +
Sbjct: 131 RGGYNCSVCKTSEAAMELFLNNQPEVIFIDMRDTTPI 167
>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
Length = 443
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 484 WKYR-DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGYN 651
W+ R V++ E K+K + + +A KK+K+ K + + SK + P + Y+
Sbjct: 378 WRLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPRRSKCSVPGLSCFYQTNYH 434
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 460 LHDSNYGQVSDRRHVEQQALQHVDGYQREEGTH-HMY 353
+H S + +V ++H+E +A H Y R + H H+Y
Sbjct: 319 IHVSVFRRVLHQKHIEVEAYNHPHVYSRVKSNHPHVY 355
>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
Length = 1279
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 587 LVRRCXRRQHHSLPSSNPMD 646
LV+R QHH+LPS +P D
Sbjct: 1192 LVKRIAGMQHHNLPSPHPED 1211
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,167,656
Number of Sequences: 59808
Number of extensions: 442779
Number of successful extensions: 1891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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