Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N03
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    24   4.8  
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       23   6.4  
AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative 5'-nucleo...    23   8.4  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 502 VRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKV 600
           ++KL D+ +   VKR A+E ++   +K  G  V
Sbjct: 343 IKKLVDELQEVEVKRAAFENEVAGESKKRGSNV 375


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 114 DDCRQTAQQMTTAIDHYGLIAKA 46
           D+  Q  ++M    DHYGL+  A
Sbjct: 171 DNHAQLVEEMREEFDHYGLLLTA 193


>AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative
           5'-nucleotidase protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 525 PLVFKLTNNITVFPSNFMGQSAYMTVITARFQTE 424
           PLV K +NN TV  +       Y+  +T  F  E
Sbjct: 279 PLVVKKSNNHTVLITQARSFGKYVGRLTVNFDCE 312


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,592
Number of Sequences: 2352
Number of extensions: 14304
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)