Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_N03
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si... 200 7e-52
At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD) 200 9e-52
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri... 198 3e-51
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si... 198 3e-51
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si... 35 0.041
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 31 0.88
At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing, put... 30 1.5
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t... 29 2.7
At5g19400.1 68418.m02312 expressed protein 28 4.7
At4g03180.1 68417.m00435 expressed protein 28 4.7
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 6.2
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 6.2
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ... 28 6.2
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co... 27 8.2
>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
similar to ribosomal protein L13A GB:O49885 [Lupinus
luteus]
Length = 206
Score = 200 bits (488), Expect = 7e-52
Identities = 94/192 (48%), Positives = 126/192 (65%)
Frame = +1
Query: 31 VVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 210
+V G K +V+D R H+LGRLA+V+AK LL G +VVVRCE+I +SG R K+K M
Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 390
FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG NAL RL+ ++G P P+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120
Query: 391 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 570
L+ G YC +GRLS E+GW + D +++LE+KRK +A +K+L
Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLS 180
Query: 571 RITKDAGEKVSK 606
++ A EKV++
Sbjct: 181 KLRAKA-EKVAE 191
>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
Length = 206
Score = 200 bits (487), Expect = 9e-52
Identities = 94/184 (51%), Positives = 122/184 (66%)
Frame = +1
Query: 31 VVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 210
+V G +K +V+D R H+LGRLA++ AK LL G KVV+VRCE+I +SG R K+K M
Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 390
FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ Y+G P P+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120
Query: 391 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 570
L+ G YC +GRLS E+GW + D +++LE KRK +A V YE+K K
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERA--HVVYERK-K 177
Query: 571 RITK 582
++ K
Sbjct: 178 QLNK 181
>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
ribosomal protein L13a -Lupinus luteus,PID:e1237871
Length = 206
Score = 198 bits (483), Expect = 3e-51
Identities = 97/194 (50%), Positives = 128/194 (65%), Gaps = 2/194 (1%)
Frame = +1
Query: 31 VVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 210
+V G K +V+DGR H+LGRLA+ AK LL G +VVVVRCE+I +SG R K+K M
Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 390
FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ ++G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120
Query: 391 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 570
L+ G YC +GRLS E+GW + D +++LE KRK ++ +V YE+K K
Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERS--QVMYERK-K 177
Query: 571 RITK--DAGEKVSK 606
++ K EKV++
Sbjct: 178 QLNKLRTKAEKVAE 191
>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
[Rattus norvegicus]
Length = 206
Score = 198 bits (483), Expect = 3e-51
Identities = 93/184 (50%), Positives = 123/184 (66%)
Frame = +1
Query: 31 VVKMXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 210
+V G +K +V+D R H+ GRLA++IAK LL G VVVVRCE+I +SG R K+K M
Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 390
FLRKR N P+ GP HFRAPSKI W+TVRGMIPHKT+RG AL RL+ ++G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120
Query: 391 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 570
L+ G YC +GRLS E+GW + D +++LE KRK ++ + YE+K K
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERS--QALYERK-K 177
Query: 571 RITK 582
++TK
Sbjct: 178 QLTK 181
>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
similar to ribosomal protein L13 GI:170132 from
[Spinacia oleracea]
Length = 241
Score = 35.1 bits (77), Expect = 0.041
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +1
Query: 67 VIDGRGHLLGRLAAVIA-----KVLLE-------GNKVVVVRCEQINISGNFFRNKLKLM 210
V+D +LGRLA+ IA K L G V+VV E++ +SG KL
Sbjct: 107 VVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRR 166
Query: 211 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 384
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 167 HSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 30.7 bits (66), Expect = 0.88
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -1
Query: 308 IIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEI 171
+I L + H LD + W+G + LH LR+ D+S S+ LK+LP++
Sbjct: 655 LIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695
>At3g10270.1 68416.m01231 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 657
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 40 MXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 201
M G++N IDG H+ G A++ + K+ V++ + I++SG R L
Sbjct: 286 MLGYANSIRTIDGGTHIEGVKASLTRTLNSLAKKLKVIKEKDISLSGEHVREGL 339
>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
DNA-binding protein [Triticum aestivum] GI:6958202;
contains Pfam profile: PF01535 PPR repeat
Length = 610
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 148 VVRCEQINISGNFF-RNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGM 306
V C Q+ + + R K+ + L +R N+ P+R +HF SK L + GM
Sbjct: 277 VFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -3
Query: 582 LGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 403
L P F F G + + + F N NF+ ++ T + ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057
Query: 402 YNTSTV 385
++T+ V
Sbjct: 1058 FDTAHV 1063
>At4g03180.1 68417.m00435 expressed protein
Length = 185
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 514 EDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 606
+DKRKGK+ KR+ E K+ T++ E+V K
Sbjct: 97 DDKRKGKSNKRIGVEDLYKQ-TREEMERVRK 126
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 40 MXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 201
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 40 MXGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKL 201
M G++N IDG H+ G A++ + K V+ + I++SG R L
Sbjct: 361 MLGYANSIRTIDGGTHIEGVKASLTRTLNTLAKKSKTVKEKDISLSGEHVREGL 414
>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 589
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -2
Query: 652 NC-IHRIG*W**MVLSPXT---PSHQHPW*SS*VSFHRQLS*QPCPSSCLQAYEQ 500
NC HRIG +L P SH+HP S SF ++ Q C C+Q+Y Q
Sbjct: 399 NCNSHRIGIDIRCILVPDHFTHESHEHPLFIS-TSFKAEIRCQGCQKECMQSYLQ 452
>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
contains Pfam profiles: PF02551 acyl-CoA thioesterase,
PF00027 cyclic nucleotide-binding domain
Length = 427
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 253 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 369
P + PS L K + ++P + +G +R +T+DGC
Sbjct: 14 PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,254
Number of Sequences: 28952
Number of extensions: 305467
Number of successful extensions: 909
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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