Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_N02
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)             153   2e-37
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            75   5e-14
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            35   0.063
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)                    30   2.4  
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)          29   4.2  
SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)                   28   7.3  
SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)                    28   7.3  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_27146| Best HMM Match : LIM (HMM E-Value=9.7)                       28   7.3  
SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)                      28   7.3  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    28   9.6  
SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)             28   9.6  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score =  153 bits (370), Expect = 2e-37
 Identities = 79/213 (37%), Positives = 119/213 (55%), Gaps = 1/213 (0%)
 Frame = +2

Query: 137 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 316
           +V+IA AVRTP+                   V  A+ RA I   ++ EV +G V +A  G
Sbjct: 9   DVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQG 68

Query: 317 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 496
           Q PARQA I AG+P       VN +C SG+K++ L  Q +  G  +I++AGG ESMS  P
Sbjct: 69  QGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAP 128

Query: 497 FYL-KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSY 673
                R    +G M L+D ++ DGL D +N +HMG  AEN AK+ +++R++QD +A+ S 
Sbjct: 129 HCCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEVSREEQDNFALTSQ 188

Query: 674 KRSAAAYEAKAFVDELVPVPVPQKRGAPVIXAE 772
           +R+  A +A  F DE+V V +  + G   + ++
Sbjct: 189 QRTETAQKAGYFSDEIVTVSIKTRAGLTEVNSD 221


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = +2

Query: 596 GNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAPVIXAE 772
           G CAEN A K  ITR++QD+YA++SY+R+AAA++A  F  E+VPV +PQK+G P I  E
Sbjct: 59  GVCAENAASKYNITREEQDDYAIHSYRRTAAAWDAGKFKQEVVPVNIPQKKGKPDIVFE 117



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
 Frame = +2

Query: 311 LGQAPARQAVIFAG-----------LPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 457
           +GQAPARQA + AG           LP ST CTT+NKVCASGMKSIM AAQ L  G+Q +
Sbjct: 1   MGQAPARQAALGAGTRXVTSIRDQALPISTPCTTINKVCASGMKSIMAAAQSLMCGSQGV 60


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 35/74 (47%), Positives = 50/74 (67%)
 Frame = +2

Query: 530  GMQLVDGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAF 709
            G Q+ D + + GLTD+     MG  AEN A+K  ITR++ D++A+ S +R AAA+E+ AF
Sbjct: 799  GAQMEDTL-WQGLTDMLPGLPMGITAENLAEKYNITREECDQFALLSQQRWAAAHESGAF 857

Query: 710  VDELVPVPVPQKRG 751
              E+VPVPV  K+G
Sbjct: 858  TAEIVPVPVKGKKG 871


>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 593 MGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDEL 721
           MG+ A+  A    ++RQ+QDEYA+ S+  +  A +A    D L
Sbjct: 13  MGHSADRLASAFHVSRQEQDEYALRSHTLAHQATQAGKLTDVL 55


>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 538 LHSSIRSFTSLQIKRYI*HRFHPTSKYYILGSSL*TLCCQ-HYRFHARGTYFVYSCTYGT 362
           +HS+ R+  +    RY     H T     + S+  TLC Q H R+  + T+ +YS T+  
Sbjct: 102 MHSNTRTLCTKTHARYALKHTHTT-----MHSNTRTLCTQTHARYALKHTHTMYSNTHTL 156

Query: 361 FWQTCKYYSL 332
             QT  +Y+L
Sbjct: 157 CTQTHAHYAL 166


>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
          Length = 1433

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
 Frame = +2

Query: 545  DGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYE-------AK 703
            DG+VFD   ++ +   M  C+ N  K   + +Q   E+   +Y R +A          A 
Sbjct: 1214 DGVVFDAAIELAHPSDMWVCSTN--KMGALVQQRLIEHHRKNYPRLSATIRFDPDPSVAH 1271

Query: 704  AFVDELVPVPVPQKRGAPV 760
             +  +  PVPVP KRG  V
Sbjct: 1272 RYRKQERPVPVPGKRGEKV 1290


>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
          Length = 1571

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -2

Query: 273  ISSLGIPALSIAALTATAPNSDADKLDKLPRKEPIGVLTADAITTSLRETLVENAAIAVN 94
            I+S  +P  +   L AT   S    L+K   +E +    A A+ T +  TLVE   + VN
Sbjct: 972  ITSTSVPEQNATVLPATTFQS----LNKTTTEESVVEPNATAVPTRVNATLVETTGMPVN 1027

Query: 93   IS 88
            ++
Sbjct: 1028 VT 1029


>SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 289 WQCLFCKFGPSTCKTSCNICRFAKKY-HMYNCK-QSMCLWHEIYNVGSTR 432
           W+C   K  PS  ++   +  F KKY H +    +S  LW+  Y + + R
Sbjct: 80  WECEHVKPVPSDVRSKMRLSGFYKKYLHAFGIPVRSNTLWYRTYAMSTDR 129


>SB_42687| Best HMM Match : UPF0262 (HMM E-Value=2.1)
          Length = 908

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
 Frame = +2

Query: 545 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYE-------AK 703
           DG+ FD   +  +  +M  C+ N    L   +Q   E+   +Y R  A          A 
Sbjct: 564 DGVAFDAAIEQAHSSYMWVCSTNKIGAL--VQQRLIEHHRKNYPRLPATIRFDPDPSVAH 621

Query: 704 AFVDELVPVPVPQKRGAPVI 763
            +  +  PVPVP KRG  V+
Sbjct: 622 CYRKQGRPVPVPGKRGEKVV 641


>SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)
          Length = 956

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 545 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYE-------AK 703
           DG+ FD + D  +   M  C+ N  K   + +Q   E+   +Y R  A          A 
Sbjct: 735 DGVAFDAVIDQAHPSDMWVCSTN--KMGALVQQRLVEHHRKNYPRLPATIRFDPDPSVAH 792

Query: 704 AFVDELVPVPVPQKRGAPV 760
            +  +  PVPVP KRG  V
Sbjct: 793 RYRKQGRPVPVPGKRGEKV 811


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 289 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCL 399
           WQ  + + GP   KTSC +C    KY++ N     CL
Sbjct: 864 WQSNYTQCGPCASKTSCPVCNI--KYNL-NDLMIQCL 897


>SB_50233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 967

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 545 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYE-------AK 703
           DG+ FD   +  +   M  C+ N  K   + +Q   E+   +Y R  A          A 
Sbjct: 707 DGVAFDAAIEQAHPSDMWVCSTN--KMGALVQQQLVEHHRKNYPRLPAIIRFDPDPSVAH 764

Query: 704 AFVDELVPVPVPQKRGAPV 760
            +  +  PVPVP KRGA V
Sbjct: 765 RYRKQGRPVPVPGKRGAKV 783


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 27/102 (26%), Positives = 41/102 (40%)
 Frame = +2

Query: 242 IERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIML 421
           I + GI  EEI      +V  A +        + + G PKS +CT+VN+V   G+ +   
Sbjct: 72  IVKVGITTEEIDY----HVHKAIIEHGAYPSPLNYRGFPKS-VCTSVNEVAVHGIPNSRC 126

Query: 422 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVD 547
              G        +  GG+       F +  G     G +LVD
Sbjct: 127 LQNGDLLSVDISLFYGGVHGDLCETFLV--GNVDESGRRLVD 166


>SB_27146| Best HMM Match : LIM (HMM E-Value=9.7)
          Length = 296

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 545 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYE-------AK 703
           DG+ FD + D  +   M  C+ N  K   + +Q   E+   +Y R  A          A 
Sbjct: 102 DGVAFDAVIDQAHPSDMWVCSTN--KMGALVQQRLVEHHRKNYPRLPATIRFDPDPSVAH 159

Query: 704 AFVDELVPVPVPQKRGAPV 760
            +  +  PVPVP KRG  V
Sbjct: 160 RYRKQGRPVPVPGKRGEKV 178


>SB_21674| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 885

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
 Frame = +2

Query: 545 DGIVFDGLTDVYNKFHMGNCAENTAKKLQITRQDQDEYAVNSYKRSAAAYE-------AK 703
           DG+ FD   +  ++  M  C+ N  K   + +Q   E+ +  Y R  A          A 
Sbjct: 664 DGVAFDAAIEQAHRSDMWVCSTN--KMGALVQQRLVEHHMKKYPRLPATIRFDPDPSVAH 721

Query: 704 AFVDELVPVPVPQKRGAPV 760
            +  +  PVPVP KRG  V
Sbjct: 722 RYRKQGRPVPVPGKRGEKV 740


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 573 SVSPSNTIPSTNCIPPYEVSP 511
           +++PSNT+P TNC P  E +P
Sbjct: 928 ALNPSNTVP-TNCCPSGETTP 947


>SB_46808| Best HMM Match : Paramecium_SA (HMM E-Value=4.2)
          Length = 191

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 296 VCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 457
           VCSA LG +PA+  V FA L      T         + SIM +   +Q  ++ +
Sbjct: 67  VCSAELGVSPAKLCVSFAELIIGDSLTVDQAKAQMAIWSIMASNNAIQVWSRPL 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,140,693
Number of Sequences: 59808
Number of extensions: 467802
Number of successful extensions: 1354
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)