Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M24
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015... 146 2e-35
12_02_0452 - 19188601-19188726,19189364-19189417,19189493-191896... 100 2e-21
01_05_0314 - 20779862-20780286,20780734-20781286 36 0.025
01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369 36 0.033
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 32 0.54
12_01_0090 + 717524-719080 31 1.3
03_06_0421 - 33797836-33797992,33798450-33798549,33798646-337987... 29 2.9
08_01_0998 - 10136050-10138356 29 3.8
06_03_0674 + 23422004-23422552,23423295-23423369,23424360-234244... 29 5.1
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 29 5.1
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 28 6.7
02_02_0109 + 6830802-6833412,6833491-6833861 28 6.7
01_06_0768 - 31829753-31829851,31830454-31830593,31830729-318308... 28 6.7
08_02_0657 - 19749835-19751942,19753123-19753561 28 8.8
>11_06_0457 -
23800451-23800576,23801259-23801312,23801390-23801539,
23801919-23802012,23802460-23802567,23802661-23802793,
23802903-23803139,23803488-23803586,23804968-23804983
Length = 338
Score = 146 bits (354), Expect = 2e-35
Identities = 72/141 (51%), Positives = 94/141 (66%)
Frame = +2
Query: 266 PQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEAL 445
P + V E + AD VCFDVDSTV DEGIDELA FCG G V TA+AM G + F+EAL
Sbjct: 115 PSKGVLETWCNADAVCFDVDSTVCLDEGIDELADFCGAGKAVAEWTAKAMTGTVPFEEAL 174
Query: 446 KKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAER 625
RL +I+P + Q+ + + K P R++PGI +L+K+L V+LVSGGFR +I+PVA
Sbjct: 175 AARLSLIKPYLSQVDDCLVKRPPRISPGIADLIKKLKANNTDVFLVSGGFRQMIKPVASE 234
Query: 626 LNIPTINIFANRLKFYFNGTF 688
L IP NI AN+L F +G +
Sbjct: 235 LGIPPENIIANQLLFGTSGEY 255
>12_02_0452 -
19188601-19188726,19189364-19189417,19189493-19189642,
19189994-19190087,19190607-19190710
Length = 175
Score = 99.5 bits (237), Expect = 2e-21
Identities = 47/92 (51%), Positives = 67/92 (72%)
Frame = +2
Query: 413 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGG 592
M G++ F++AL RL + +P++GQ+ + +EK P R++PGI ELVK L + V VYLVSGG
Sbjct: 1 MTGSVPFEKALAARLSLFKPSLGQVEDCMEKRPPRISPGIAELVKMLKAKNVDVYLVSGG 60
Query: 593 FRSLIEPVAERLNIPTINIFANRLKFYFNGTF 688
FR +I+PVA +L IP NIFAN+L F +G +
Sbjct: 61 FRQMIKPVAMQLGIPPENIFANQLLFGTSGEY 92
>01_05_0314 - 20779862-20780286,20780734-20781286
Length = 325
Score = 36.3 bits (80), Expect = 0.025
Identities = 22/89 (24%), Positives = 44/89 (49%)
Frame = -3
Query: 472 RPDDVQSLLQRFLECHITAHCFRRQSFNLVSFPAELGQFIDAFILYDGRVYIEANAVRCP 293
+P D++ L +++L H+ A +R S N++ +++D F+ R E
Sbjct: 166 KPKDLKELKEQYLLAHLVAGHWRMAS-NIL-------EYVDNFLFQSLREKDEEEVRIAM 217
Query: 292 EQLLDSLLRRHHADRHQ*ERLQRRVLQVA 206
++L D L ++HH +H R+ +L +A
Sbjct: 218 QRLQDDLQKKHHGSQHSVRRIAHELLGIA 246
>01_07_0175 - 41715304-41716760,41717200-41717500,41718109-41718369
Length = 672
Score = 35.9 bits (79), Expect = 0.033
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 194 YSLKSNLQYATLKTLSLVSISVMSPQ-QTVQELFRTADCVCFDVDSTVIQDEGIDELAKF 370
Y L N Q T LV +SP Q +++ R AD + +T++QDE + +K
Sbjct: 531 YCLVHNSQCTVKSTFCLVKAGAVSPLIQILEDDNREADGAVLEALATLMQDEIWENGSKV 590
Query: 371 CGKGDEVKRLTAEAMGGNMTFQE 439
K V L A GN T QE
Sbjct: 591 IEKASGVHALLRIAEAGNSTSQE 613
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 31.9 bits (69), Expect = 0.54
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -1
Query: 429 VILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA-VLNNS 283
V+ PP +S + + SSP +N + SMPSS T ES S T +A VL+ S
Sbjct: 486 VLAPPSSS--NAVESSPKIENSGTKSMPSSQHTSESDSATTSAAQVLDKS 533
>12_01_0090 + 717524-719080
Length = 518
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/79 (35%), Positives = 42/79 (53%)
Frame = -1
Query: 528 PGVSLTGNFSMNSLI*PTLGLMMSSLFFNASWNVILPPIASAVSLLTSSPFPQNLASSSM 349
P S G +++L+ LGL+ S F +A + LPP SA+SLL +P P L S S+
Sbjct: 13 PRRSAAGGHQLHALL-AKLGLLHRSEFLSALLSR-LPPSPSALSLLLEAP-PAVL-SPSL 68
Query: 348 PSSCMTVESTSKQTQSAVL 292
+ S+S+ SA+L
Sbjct: 69 VCPVIVAFSSSQAPSSALL 87
>03_06_0421 -
33797836-33797992,33798450-33798549,33798646-33798700,
33798965-33799085,33799759-33799856,33800004-33800105,
33800196-33800360,33800441-33800522,33800960-33801117,
33801214-33801339,33801533-33801616,33802011-33802100,
33802188-33802258,33803420-33803513,33803585-33803671,
33804258-33804306,33805450-33805538,33805691-33805756,
33806009-33806071,33806174-33806282,33806376-33806446,
33807212-33807298,33807390-33807535,33808848-33808953,
33809429-33809494,33809672-33809741,33810839-33811206
Length = 959
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +2
Query: 236 LSLVSISVMSPQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKR 397
+ ++S+ + +P+ T+QEL F T++ ++GI E K G+G V R
Sbjct: 268 VDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYK-TGRGRVVMR 320
>08_01_0998 - 10136050-10138356
Length = 768
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -1
Query: 543 TNSVIPGVSLTGNFSMNSLI*PTLGLMMSSLFFNASWNV---ILPPIASAVSLLTSSPFP 373
T +++ G+ L+ N+ N I L + S F N S N I+P + +L S F
Sbjct: 571 TVALMAGIDLSSNYLSNE-IPSELCNLESMRFLNLSRNHLSGIIPKEIGNLKILESLDFS 629
Query: 372 QNLASSSMPSSCMTVESTS 316
N S S+PSS + S S
Sbjct: 630 WNELSGSIPSSISNLMSLS 648
>06_03_0674 +
23422004-23422552,23423295-23423369,23424360-23424443,
23424749-23424991,23425348-23425515,23425608-23425727,
23426372-23427016
Length = 627
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 410 AMGGNMTFQEA--LKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLV 583
A GG + + L++ DI+ G++ + +E+ V L I LV + +R ++
Sbjct: 227 AYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLE-AIKYLVMDEADR-----ML 280
Query: 584 SGGFRSLIEPVAERLNIPTINIFANRLKFYFNGTF 688
GF I + ER+N+P ++ R F+ TF
Sbjct: 281 DMGFEPQIRKIVERMNMPRKSV---RQTMLFSATF 312
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -1
Query: 462 MSSLFFNASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 298
+SS F+ S L ++S +L +PF ++A S+ PSS T ST QT S+
Sbjct: 182 ISSNNFSGSLPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPT-GSTPTQTPSS 235
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 420 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 298
PPI+S++SL+ S+P P + P +TV + S + S+
Sbjct: 4 PPISSSLSLMASNPIPS--PPVAKPGRPLTVAACSNSSSSS 42
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 554 HERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRL 664
H++ +YL + GF IEP LN+ I++ +N L
Sbjct: 266 HKKLQNLYLYANGFTGEIEPNVSALNLVEIDVSSNEL 302
>01_06_0768 -
31829753-31829851,31830454-31830593,31830729-31830818,
31830905-31831059,31831598-31831663,31831862-31831931,
31832299-31832429,31832516-31832702,31832828-31832894
Length = 334
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 524 PGITELVKELHERGVIVYLVSGGFRSLIE 610
PG+ LVK LH GV + L S R I+
Sbjct: 93 PGVERLVKHLHRNGVPLALASNSVRRNID 121
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/80 (27%), Positives = 41/80 (51%)
Frame = +2
Query: 368 FCGKGDEVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVK 547
FC +GD VKR E + G + + + +R + QIRE +E P+R P + + +
Sbjct: 194 FCDEGDPVKREDEERLDG-PGYDD-----VGGVRKQLAQIRELVE-LPLR-HPKLFQTLG 245
Query: 548 ELHERGVIVYLVSGGFRSLI 607
+G+++Y G ++L+
Sbjct: 246 VRPPKGILLYGPPGTGKTLL 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,455
Number of Sequences: 37544
Number of extensions: 343605
Number of successful extensions: 1056
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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