Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M24
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95) 58 1e-08
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27) 31 1.3
SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018) 29 3.9
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_27497| Best HMM Match : Death (HMM E-Value=0.028) 28 6.8
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 28 6.8
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9) 28 9.0
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 28 9.0
>SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)
Length = 209
Score = 57.6 bits (133), Expect = 1e-08
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 287 LFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEV 391
++++AD VCFDVDSTV+ E IDELA FCG+G+EV
Sbjct: 12 IWKSADAVCFDVDSTVVTGEAIDELASFCGRGEEV 46
Score = 52.4 bits (120), Expect = 4e-07
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +2
Query: 551 LHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLKFYFN 679
L G VYLVSGGF+S++EP+A+ L IP N+FAN++ F N
Sbjct: 62 LLSHGTQVYLVSGGFQSILEPIAKDLGIPKTNVFANKILFNSN 104
>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
Length = 687
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/105 (23%), Positives = 51/105 (48%)
Frame = -1
Query: 444 NASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAVLNNSWTVC*G 265
+ S+N LPP A S T++ P ++A+ + S + + +S T + + + S ++
Sbjct: 70 SVSYNTTLPPAPDATSTATTAISPSSVANMTTLVSSVNLTRSSLST-TLIPSISTSILSY 128
Query: 264 DITLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSI 130
+ T+I+T + V L F ++V+++P+ I T I
Sbjct: 129 NTTVIETPNTTRFVTSTILSF----TVNVSANPTTSLIQPNITLI 169
>SB_39066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 213 CSTRR*RRSHWCRSA*CRLNRLSRSCSGQRTA 308
C RR R CR + C + RLSRSC +R A
Sbjct: 176 CCVRRLTRCCVCRLSRCCVRRLSRSCCVRRLA 207
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 422 NMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTP--GITELVKELHERGVIVYLVSGGF 595
+++F+E K L+ +R I ++ RLT I ELVK H RG+ ++ F
Sbjct: 928 SLSFEELKKSVLESLRQEPAPIPPEVQHGWWRLTEPSNIKELVKACHSRGIREKMLQKNF 987
Query: 596 RSLIEPVAERLNIP 637
+ E ++ P
Sbjct: 988 QKYSEYISSSCKKP 1001
>SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)
Length = 349
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 286 LLDSLLRRHHADRHQ*ERLQRRVL 215
+ DS ADRH+ ER+QRRVL
Sbjct: 53 MYDSKAAERRADRHRQERIQRRVL 76
>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 993
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 511 WKFLNEFSDLTDVRPDDVQSLLQRFLE 431
WK + EF + ++R D+ LL RF+E
Sbjct: 615 WKAMAEFPGVVEIRSRDIVPLLLRFIE 641
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 408 SAVSLLTSSPFPQNLASSSMPSSCMTVES-TSKQTQSAVLNNSWTVC 271
SAV+ SP P NL + S TV+S +Q++++ + +S ++C
Sbjct: 3389 SAVNSREGSPLPTNLEIGNASKSVSTVKSEEQEQSEASCVQSSSSIC 3435
>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
Length = 892
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 470 PNVGQIREFIEKFPVRLTPGITEL-VKELHERGVIVYLVSGGFRSLIEPVAERL 628
P VG++RE I + +L + ++ L V+ L+ GF S+ P AER+
Sbjct: 342 PQVGKLRENIHEIAQKLLQVREPIPIRWLQFEKVVASLIEKGFNSIKLPEAERI 395
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = -1
Query: 417 PIASAVSLLTSSPFP-QNLASSSMPSSCMTVESTSKQTQSAVLNNSWT 277
P+A + SL +SS + + LAS S SC +VE++++ NNS++
Sbjct: 886 PLAPSTSLTSSSAYSTEGLASGSESGSCPSVEASAEAKDCD--NNSYS 931
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 28.3 bits (60), Expect = 6.8
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Frame = -1
Query: 576 YTMTPLSCNSFTNSVIPGVSLTGNFSMNSLI*PTLGLMMS---------SLFF--NASWN 430
YT + L + T+S +P LT + S++ + TL ++S S+F ++S +
Sbjct: 518 YTSSSLPSDFLTSSSLPSDFLTSSSSLSDFL--TLSSLLSDFLTSSSSLSVFLTSSSSLS 575
Query: 429 VILPPIASAVSLLTSSP-FPQNLASSSMPSSCMTVES 322
V L +S LTSS L SSS+PS +T S
Sbjct: 576 VFLTSSSSLSDFLTSSSSLSVFLTSSSLPSDFLTSSS 612
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 509 PVRLTPGITELVKELHERGVIVYLVSGGFRSLIEP 613
P RLTP + E V L GV+ + R L+EP
Sbjct: 3146 PFRLTPNMAEFVTPLGVSGVMSASMVAAARCLVEP 3180
>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
Length = 975
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 364 GQFIDAFILYDGRVYIEANAVRCPEQLLDSLLRRHHADRH-Q*ERLQRRVLQVAFQTVKS 188
G + ++++ G VYI R LL+S R H R ER ++ V+ V S
Sbjct: 82 GVSVPRYVVHPGEVYIG----RGGRGLLESKWRNPHRMREGNVERSRQEVVDHYLSDVSS 137
Query: 187 HLCC 176
H CC
Sbjct: 138 HRCC 141
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +2
Query: 383 DEVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPG--------ITE 538
+EV + +++ GN +EAL I+ N R+ K V +T + +
Sbjct: 2317 EEVNKAIRQSLSGNSNLEEALTNAKKIL--NTPNTRKSSRKAVVIITDNTSGKTPTVLKD 2374
Query: 539 LVKELHERGVIVYLVSGG 592
K LHE+G+IV VS G
Sbjct: 2375 TAKPLHEQGIIV--VSSG 2390
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,387,465
Number of Sequences: 59808
Number of extensions: 396679
Number of successful extensions: 1442
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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