Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M24
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearl... 161 4e-40
At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearl... 161 4e-40
At1g22940.1 68414.m02867 thiamin biosynthesis protein, putative ... 36 0.028
At5g54480.1 68418.m06784 hypothetical protein 33 0.26
At4g21470.1 68417.m03105 riboflavin kinase/FAD synthetase family... 30 1.4
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 30 1.4
At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ b... 30 1.4
At5g24160.1 68418.m02842 squalene monooxygenase 1,2 / squalene e... 30 1.8
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 30 1.8
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 30 1.8
At5g07260.1 68418.m00828 homeobox protein-related contains weak ... 29 2.4
At4g35070.1 68417.m04978 expressed protein 29 3.2
At5g55820.1 68418.m06956 expressed protein 29 4.2
At5g25265.1 68418.m02995 expressed protein 29 4.2
At1g21810.1 68414.m02729 expressed protein 29 4.2
At5g58410.1 68418.m07314 expressed protein contains similarity t... 28 5.6
At5g24150.1 68418.m02839 squalene monooxygenase 1,1 / squalene e... 28 5.6
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat... 28 7.4
At1g21590.1 68414.m02699 protein kinase family protein contains ... 28 7.4
At5g60350.1 68418.m07566 hypothetical protein 27 9.8
At5g04090.2 68418.m00393 expressed protein 27 9.8
At5g04090.1 68418.m00394 expressed protein 27 9.8
At3g63140.1 68416.m07091 mRNA-binding protein, putative similar ... 27 9.8
At2g35480.1 68415.m04346 expressed protein 27 9.8
At1g27960.1 68414.m03425 expressed protein contains Pfam profile... 27 9.8
>At1g18640.2 68414.m02324 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 161 bits (391), Expect = 4e-40
Identities = 75/141 (53%), Positives = 100/141 (70%)
Frame = +2
Query: 266 PQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEAL 445
P + + +L+R+ + VCFDVDSTV DEGIDELA+FCG G V TA AMGG++ F+EAL
Sbjct: 72 PSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEAL 131
Query: 446 KKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAER 625
RL + +P++ ++ E+++K P RL+PGI ELVK+L + VYL+SGGFR +I PVA
Sbjct: 132 AARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDVYLISGGFRQMINPVASI 191
Query: 626 LNIPTINIFANRLKFYFNGTF 688
L IP NIFAN L F +G F
Sbjct: 192 LGIPRENIFANNLLFGNSGEF 212
>At1g18640.1 68414.m02323 3-phosphoserine phosphatase (PSP) nearly
identical to 3-phosphoserine phosphatase GI:3759177 from
[Arabidopsis thaliana]
Length = 295
Score = 161 bits (391), Expect = 4e-40
Identities = 75/141 (53%), Positives = 100/141 (70%)
Frame = +2
Query: 266 PQQTVQELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEAL 445
P + + +L+R+ + VCFDVDSTV DEGIDELA+FCG G V TA AMGG++ F+EAL
Sbjct: 72 PSKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEAL 131
Query: 446 KKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGGFRSLIEPVAER 625
RL + +P++ ++ E+++K P RL+PGI ELVK+L + VYL+SGGFR +I PVA
Sbjct: 132 AARLSLFKPSLSKVEEYLDKRPPRLSPGIEELVKKLRANNIDVYLISGGFRQMINPVASI 191
Query: 626 LNIPTINIFANRLKFYFNGTF 688
L IP NIFAN L F +G F
Sbjct: 192 LGIPRENIFANNLLFGNSGEF 212
>At1g22940.1 68414.m02867 thiamin biosynthesis protein, putative
strong similarity to hydroxymethylpyrimidine
kinase/thiamin-phosphate pyrophosphorylase (BTH1)
GI:7488455 from [Brassica napus]
Length = 522
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 431 FQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGG 592
F+E L DII PNV + ++ F + + K LHE G LV GG
Sbjct: 152 FRERLLPIADIITPNVKEASALLDGFRIETVAEMRSAAKSLHEMGPRFVLVKGG 205
>At5g54480.1 68418.m06784 hypothetical protein
Length = 720
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 139 EFDHNSFVTRRRSNRDGSLQFEKQPAVRDVEDALTGVDQRDVASTDCPGVVQD 297
E D+NS + R N+ + + +K+ VR+ + +D+RDV + C G V D
Sbjct: 213 ESDYNSLI---RKNKKKNKKKKKKKNVRESSSVASEIDKRDVEANTCNGQVAD 262
>At4g21470.1 68417.m03105 riboflavin kinase/FAD synthetase family
protein contains Pfam profiles PF01687: Riboflavin
kinase / FAD synthetase, PF00702: haloacid
dehalogenase-like hydrolase
Length = 379
Score = 30.3 bits (65), Expect = 1.4
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Frame = +2
Query: 287 LFRTADCVCFDVDSTVIQDEGI--DELAKF-CGKGDEVKRLTAEAMGGNMTFQEALKKRL 457
L + + CV D+D T+I +G+ D L K+ C G + + + G + A
Sbjct: 7 LKKLSSCVLIDLDGTLINTDGVVGDILRKYLCKYGKQWDGRESLKIVGKTPVEAATTIVE 66
Query: 458 DIIRP-NVGQIR-EFIEKF-----PVRLTPGITELVKELHERGVIVYLVSGGFRSLIE 610
D P V + EF F ++ PG L++ L GV V L S R+ IE
Sbjct: 67 DYELPCKVDEFNSEFYPLFSAQMDKIKSLPGANRLIRHLKCHGVPVALASNSSRANIE 124
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Frame = +2
Query: 377 KGDEVKRLTAEAMGGN---MTFQEALKKRLDIIRPNVGQIREFIEKFPVRLT-PGITELV 544
+GD V+ LT + G+ + + + + RL++ R +F+ +FP+ PG + +
Sbjct: 89 EGDVVEELTVKTCEGSSMAIVGRPSSRARLEMNRS------QFLHRFPLDGDLPGSSSMS 142
Query: 545 KELHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFAN 658
K++ +RG + L + G SL E +L I +N AN
Sbjct: 143 KKVIDRGTVSILRNAGKMSLPETSNGQLAIIAVNGEAN 180
>At2g30340.1 68415.m03692 LOB domain protein 13 / lateral organ
boundaries domain protein 13 (LBD13) identical to LOB
DOMAIN 13 [Arabidopsis thaliana] GI:17227158 SP|Q9AT61
Length = 268
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 420 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 298
PP LL+S P P S+PS M V S+S SA
Sbjct: 199 PPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSSA 239
>At5g24160.1 68418.m02842 squalene monooxygenase 1,2 / squalene
epoxidase 1,2 (SQP1,2) identical to SP|O65402
Length = 517
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 413 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGG 592
+G E + DI +P + F L G T+ KE +GV YL SGG
Sbjct: 369 LGDANKVSEVINSFYDIRKPMSATVNTLGNAFSQVLI-GSTDEAKEAMRQGVYDYLCSGG 427
Query: 593 FRS 601
FR+
Sbjct: 428 FRT 430
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 532 YRVSERVTRERSHRISSFGRIQKSNRT 612
YR ER++RE + R+ GRI + + T
Sbjct: 289 YREKERISREEAWRVQEIGRINREHET 315
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 532 YRVSERVTRERSHRISSFGRIQKSNRT 612
YR ER++RE + R+ GRI + + T
Sbjct: 212 YREKERISREEAWRVQEIGRINREHET 238
>At5g07260.1 68418.m00828 homeobox protein-related contains weak
similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
[Arabidopsis thaliana]
Length = 541
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 433 ECHITAHCFRRQSFNLVSFPAELGQFIDAFI 341
EC +TA C+ + +V+ P ELG +++ +
Sbjct: 496 ECFVTASCYVKADQTMVTSPNELGSYMENMV 526
>At4g35070.1 68417.m04978 expressed protein
Length = 265
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Frame = +2
Query: 122 VNKIEVNSIIIVSLLGEEATE-----MALYSL--KSNLQYATLKTLSLVSISVMSPQQTV 280
+ K+E +++++S EE ++ M L L K ++ T + ++ + +++ T
Sbjct: 112 LRKMESKALLLMSQKEEEMSKALNKNMELEDLLRKMEMENQTWQRMARENEAIVQTLNTT 171
Query: 281 QELFRTADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAM 415
E R C+D ++DEG FCG + L A+ M
Sbjct: 172 LEQVRERAATCYDAGEAEVEDEG-----SFCGGEGDGNSLPAKKM 211
>At5g55820.1 68418.m06956 expressed protein
Length = 1826
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 636 GMFSLSATGSIRLLNPPETRYTMTPLSCNSFTNSVIP 526
G + G+ R + PP +R++ LSCNS +V P
Sbjct: 1442 GKENQGGAGAKRNVKPPSSRFSKPKLSCNSSLTTVGP 1478
>At5g25265.1 68418.m02995 expressed protein
Length = 366
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 258 TLIDTSESVFNVAYCRLLFKL*RAISVASSPSNETIMIEFTSIL 127
T + S+SV+N CR+++ + I ++ P +E M FT IL
Sbjct: 72 TAVTASDSVYNTWQCRVMYYWFKKIQASAGPGSE--MGGFTRIL 113
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +2
Query: 386 EVKRLTAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELH 556
E+K+ +A N+ ++ + ++ V Q+R+F ++ + +TE KELH
Sbjct: 42 ELKQKLEDAADKNIVLEDRVSHLDGALKECVRQLRQFRDEQEKNIQAAVTESTKELH 98
>At5g58410.1 68418.m07314 expressed protein contains similarity to
hypothetical proteins
Length = 1873
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 146 IIIVSLLGEEATEMALYSLKSNLQYATLKTLSLVSISVMSPQQTVQEL 289
+I+V+ E + + +SLKS Q ATL T L SI ++ + + L
Sbjct: 831 VIVVAKFAAEVIDGSFFSLKSLSQDATLLTTVLSSIFIIDLENRMTSL 878
>At5g24150.1 68418.m02839 squalene monooxygenase 1,1 / squalene
epoxidase 1,1 (SQP1,1) identical to SP|O65404
Length = 516
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 413 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIVYLVSGG 592
+G + +K DI +P + F L T+ KE +G YL SGG
Sbjct: 368 LGNAQKISQVIKSFYDIRKPMSATVNTLGNAFSQVLVAS-TDEAKEAMRQGCYDYLSSGG 426
Query: 593 FRS 601
FR+
Sbjct: 427 FRT 429
>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -1
Query: 534 VIPGVSLTGNFSMNSLI*PTLGLMMSSLFFNASWNVILPPIASAVSLLTSSPFPQNLASS 355
V+ G LT L T+ + +L++ +N++ PIA+ V L P + +
Sbjct: 839 VLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVRIPIAAGVLL----PLTGTMLTP 894
Query: 354 SMPSSCMTVESTSKQTQSAVL 292
SM + M V S T S +L
Sbjct: 895 SMAGALMGVSSLGVMTNSLLL 915
>At1g21590.1 68414.m02699 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 756
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +2
Query: 503 KFPVRLTPGITELVKELHE 559
KFP LTP IT LVKEL E
Sbjct: 265 KFPEDLTPFITMLVKELPE 283
>At5g60350.1 68418.m07566 hypothetical protein
Length = 292
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = +1
Query: 544 ERVTRE--RSHRISSFGRIQKSNRTGRGE 624
E++T+E R+ + SFG I +S RTG+ E
Sbjct: 2 EKITKEERRNRCLPSFGSIYRSKRTGKKE 30
>At5g04090.2 68418.m00393 expressed protein
Length = 264
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -3
Query: 400 QSFNLVSFPAELGQFIDAFILYDGRVYIEANAVRCPEQLLDSLLRRHHADRHQ*ERLQRR 221
Q+F+L A+ Q D Y+G ++ A+A E LDS R H H ERL+
Sbjct: 199 QNFSLSDLTADFSQSSDILESYEGSPFLLADA----ENFLDSSERVEHQGDH--ERLRTI 252
Query: 220 VLQVAFQTVKSH 185
+++ +S+
Sbjct: 253 SSGFSYENFRSN 264
>At5g04090.1 68418.m00394 expressed protein
Length = 305
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -3
Query: 400 QSFNLVSFPAELGQFIDAFILYDGRVYIEANAVRCPEQLLDSLLRRHHADRHQ*ERLQRR 221
Q+F+L A+ Q D Y+G ++ A+A E LDS R H H ERL+
Sbjct: 240 QNFSLSDLTADFSQSSDILESYEGSPFLLADA----ENFLDSSERVEHQGDH--ERLRTI 293
Query: 220 VLQVAFQTVKSH 185
+++ +S+
Sbjct: 294 SSGFSYENFRSN 305
>At3g63140.1 68416.m07091 mRNA-binding protein, putative similar to
mRNA binding protein precursor (GI:26453355)
[Lycopersicon esculentum]
Length = 406
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = -1
Query: 468 LMMSSLFFNASW-----NVILPPIASAVSLLTSSPFPQNLASSSMPSSCM 334
L SSLFF++ N+++PP SL +SS +L+SSS SS +
Sbjct: 4 LSSSSLFFSSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSSSSSL 53
>At2g35480.1 68415.m04346 expressed protein
Length = 195
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +2
Query: 401 TAEAMGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVKELHERGVIV 574
TA +G T++ ALK + ++ P +IR+F+ + ++ + K + +R +++
Sbjct: 10 TAYFLGIRRTYRLALKTQRRLVSPKHPRIRDFMHRRTYQIFDMALRVHKNIQQRDMVI 67
>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 539
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 317 DVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGN 424
+ D +V+QD+ I FCG+G E + A+ N
Sbjct: 24 NTDQSVLQDQDIVSSRPFCGQGTESFHIGADTPRSN 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,605
Number of Sequences: 28952
Number of extensions: 280605
Number of successful extensions: 963
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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