Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M21
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   4.3  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   7.4  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 328 QQQYYFKANYHNYKNAQI*HPRKVKSKQ 411
           QQQYY+  N+ N +N  I H   V+  Q
Sbjct: 356 QQQYYYNKNHPNSEN-YINHQNYVQGYQ 382


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 328 QQQYYFKANYHNYKNAQI*HPRKVKSKQ 411
           QQQYY+  N+ N +N  I H   V+  Q
Sbjct: 304 QQQYYYNKNHPNSEN-YINHQNYVQGYQ 330


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 558 IIYPDTIPSTTAVKTIPLHPSSQYPTAF 475
           I Y  TI   ++   IPL P S+  TAF
Sbjct: 388 IRYMSTIDLRSSYWQIPLSPESRQYTAF 415


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = +2

Query: 209 LFISIPNSCTAMLNLSRLCRCKQSLSAVQ 295
           +F+++   C +MLN     +C+ + + V+
Sbjct: 152 IFVALLEHCFSMLNYVYSSKCENNSTGVE 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,879
Number of Sequences: 336
Number of extensions: 2829
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)