Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M21
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    31   0.16 
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    30   0.37 
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    29   0.65 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   4.6  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.0  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   8.0  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
 Frame = +2

Query: 209 LFISIPNSCTAMLNLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNI 388
           +F  +P +C +++ LS++       S++    L+++      S ++         HRY++
Sbjct: 283 IFNVLPTTCKSLVVLSQVRSTAVGTSSIYYSFLLATLLSTKPSALA------ISEHRYSL 336

Query: 389 LGRLSLSSTIKSNSIIMRFCSSTPKP-KTSKAVGYWLLGCSGMVFTAVVLGMVSGY 553
           +  ++LSS   +    ++  ++TPK     K++  W       V  ++VL +VS Y
Sbjct: 337 VESVTLSSLFDALHETLQLKAATPKAVHVDKSINVW----ESDVGDSLVLSLVSAY 388


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 473 SKAVGYWLLGCSGMVFTAVVLGMVS 547
           SK V +WLLG S +V   VV+G ++
Sbjct: 95  SKKVAFWLLGSSALVLAIVVVGGIT 119


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 200 RFCLFISIPNSCTAMLNLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTK 370
           RF L  SI +SC  M  L+   R  Q    + S  ++  + GF+ S +   +I   K
Sbjct: 147 RFSLSTSITHSCVFMFGLTLFSRLIQIPFNLYSTFVIEEKYGFNKSTLKIFVIDLLK 203


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +2

Query: 218 SIPNSCTAMLNLSRLCRCKQSL--SAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNIL 391
           S+ +S T   +L+       SL  S++ S  L SS    S+S+ S    +TT     +  
Sbjct: 118 SLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTT-SSSLASSSTNSTTSATPTSSA 176

Query: 392 GRLSLSSTIKSNSIIMRFCSSTPKPKTSKA 481
              SLSST  SNS      +S+    T+ A
Sbjct: 177 TSSSLSSTAASNSATSSSLASSSLNSTTSA 206


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
 Frame = +2

Query: 215 ISIPNSCTAMLNLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQI--ITTTKTHRYNI 388
           ++IPN    + N S +    ++L  V+ K L+ +    S S  +  +  +    T+R   
Sbjct: 293 VAIPNG--GLSNFSSIML--KNLGYVKGKALLMNMPTSSISFAALTLFGLIPEFTNRRMD 348

Query: 389 LGRLSLSSTIKSNSIIMRFCSSTPKPKTSKAVGYWLLGCSGMVFTAVV 532
           +  + L+  + S S+I     +  KP  ++  GYWL G S + +  ++
Sbjct: 349 IALVGLAINLTSGSLI-----AFAKPTHAQLAGYWLFGISPIPYICIL 391


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 278 SLSAVQSKLLVSSRNGFSNSIISRQIITTTKTHRYNILGRLSLSSTIKSNSIIM 439
           ++SA  ++  V   N  S  ++SRQ ITT   +  +     S +S I   SI++
Sbjct: 232 AISANSNEPGVIGPNSLSRELVSRQTITTLTDYMTDSKAPHSATSLINGVSIVI 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,035
Number of Sequences: 5004
Number of extensions: 46682
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)