Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M21
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06) 31 0.92
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 1.2
SB_53778| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 2.1
SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36) 30 2.1
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9) 29 2.8
SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30) 29 2.8
SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_36806| Best HMM Match : RVT_1 (HMM E-Value=3.1e-35) 29 3.7
SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 28 8.5
SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 28 8.5
SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36) 28 8.5
SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 28 8.5
>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
Length = 606
Score = 31.1 bits (67), Expect = 0.92
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +2
Query: 314 SRNGFSNSIISRQIITTTKTH-------RYNILGRLSLSSTIKSNSIIMRFCSSTPKPKT 472
+ NGF+N S ++ K +Y +LG + +++ I+ C STP+ T
Sbjct: 436 TENGFTNQTTSCKVYHVVKGFNILWQMPQYALLGMSEVFASMTGLEIVYSLCPSTPQSVT 495
Query: 473 SKAVGYWLLGCSGMVFTAVVLGMV 544
S Y ++ C G + + V + +V
Sbjct: 496 SAI--YNIMICIGSILSFVTMAIV 517
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 540 IPSTTAVKTIPLHPSSQYPTAFDVFGLGVEEQ 445
+P+T+AV T P++ P D GLGVE++
Sbjct: 391 VPTTSAVPTTTGAPTTAPPDCLDALGLGVEDR 422
>SB_53778| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 383
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 398 LSLSSTIKSNSIIMRFCSSTPKPKTSKAVGYWLLGCSGMVFTAVV 532
L ++S + +I+ +S PK KAV ++L+GC VF ++
Sbjct: 268 LGITSVLTITTILNMLNNSMPKVSYVKAVDWYLIGCFLFVFAVLL 312
>SB_34393| Best HMM Match : RVT_1 (HMM E-Value=2e-36)
Length = 1198
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 341 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 231 INKETIVRKNPHLFNGLGKLSGEYTIRLKEGAKSFCLTTPR 271
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 341 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 402 INKETIVRKNPHLFNGLGKLSGEYTIRLKEEAKPFCLTTPR 442
>SB_21631| Best HMM Match : SRP19 (HMM E-Value=7.9)
Length = 201
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 341 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 49 INKETIVRKNPHPFNGLGKLSGEYTIRLKEGAKPFCLTTPR 89
>SB_20246| Best HMM Match : RVT_1 (HMM E-Value=1.4e-30)
Length = 1191
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 341 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 398 INKETIVRKNPHPFNGLGKLSGEYTIRLKEGAKPFCLTTPR 438
>SB_7017| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 341 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 395 INKETIVRKNPHLFNGLGKLSGEYTIRLKEGAKPFCLTTPR 435
>SB_36806| Best HMM Match : RVT_1 (HMM E-Value=3.1e-35)
Length = 380
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 344 SRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
+R+ I H +N LG+LS TI+ FC +TP+
Sbjct: 62 NRETIVRKNPHLFNGLGKLSGEYTIRLKEGAKPFCLTTPR 101
>SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -3
Query: 555 IYPDTIPSTTAVKTIPLHPSSQY----PTAFDVFGLGVEEQNR 439
+YP+ ST A + +P P+SQ P A DV G+ V + NR
Sbjct: 189 LYPNMTISTIAPEGLPSEPTSQQSSRNPQASDVEGMEVNQCNR 231
>SB_19905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 341 ISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
I+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 395 INKETIVRKNPHIFNGLGKLSGEYTIRLKEGAKPFCLTTPR 435
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 308 VSSRNGFSNSIISRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSST 457
V N N+I+S I + KT + L ++ IKSNSI + + S +
Sbjct: 426 VGCANDLDNAIVSCPIEKSKKTKDHRAQRHLQKTAAIKSNSISLEWYSDS 475
>SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 890
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 344 SRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 297 NKETIVRKNPHLFNGLGKLSGEYTIRIKEGAKPFCLTTPR 336
>SB_13360| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 480
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 377 RYNILGRLSLSSTIKSNSIIMRFCSSTPKPKTS--KAVGYWLLGCSGMVFTAVVLGMV 544
RY I R+SL T + + S++ P+ S KA+ ++L+G VF+ +V ++
Sbjct: 299 RYYIGERVSLGITTVLTIVFLLGSSNSTMPRVSYAKAIDWYLIGSFMFVFSTLVTDLL 356
>SB_58314| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8e-36)
Length = 444
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 374 HRYNILGRLSLSSTIKSNSIIMRFCS--STPKPKTSKAVGYWLLGCSGMVFTAVV 532
HR R++LS T +I++ + S PK SKA+ Y+L+ G +F +++
Sbjct: 270 HRNAGPARVTLSITTILTTILLTSSTNGSMPKVSYSKAIDYFLMTSLGFIFMSLL 324
>SB_16404| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 765
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 344 SRQIITTTKTHRYNILGRLSLSSTIKSNSIIMRFCSSTPK 463
+++ I H +N LG+LS TI+ FC +TP+
Sbjct: 279 NKETIVRKNPHLFNGLGKLSGEYTIRIKEGAKPFCLTTPR 318
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,926
Number of Sequences: 59808
Number of extensions: 325285
Number of successful extensions: 787
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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