Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M21
(707 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 27 0.17
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 25 0.93
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 24 1.6
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 24 1.6
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 2.1
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 23 2.1
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 22 5.0
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 6.6
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 6.6
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 6.6
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 21 8.7
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 21 8.7
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 8.7
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 27.1 bits (57), Expect = 0.17
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 449 SSTPKPKTSKAVGYWLLGCSGMVFTAVV 532
+S PK KA W LGC+ +F A+V
Sbjct: 283 NSLPKVSYIKASEIWFLGCTIFLFAAMV 310
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 24.6 bits (51), Expect = 0.93
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 449 SSTPKPKTSKAVGYWLLGC 505
S+ P+P + A+G+W + C
Sbjct: 371 SAIPEPSKNPAMGHWQMSC 389
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +2
Query: 386 ILGRLSLSSTIKSNSIIM--RFCSSTPKPKTSKAVGYWLLGCSGMVFTAV 529
I GR++L T + M S P KA+ W+ GC VF A+
Sbjct: 228 IPGRVALLVTSMLTLVTMFTGLKSDIPPVAYVKALDVWMAGCMMFVFAAL 277
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.8 bits (49), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 452 STPKPKTSKAVGYWLLGCSGMVFTAVV-LGMVSGYI 556
S P KA+ W+ CS VF +++ +V+ Y+
Sbjct: 266 SLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNYM 301
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 23.4 bits (48), Expect = 2.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 538 YGIWIYYNALQYLLY 582
YGIW+Y+ L ++Y
Sbjct: 220 YGIWVYFVPLFLIIY 234
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 23.4 bits (48), Expect = 2.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +1
Query: 538 YGIWIYYNALQYLLY 582
YGIW+Y+ L ++Y
Sbjct: 96 YGIWVYFVPLFLIIY 110
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 22.2 bits (45), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 293 QSKLLVSSRNGFSNSIISRQIITTTKTH 376
+S +LV ++NG IS I+T +TH
Sbjct: 431 KSSVLVHTKNGRLKYQISDNDISTNETH 458
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 6.6
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +2
Query: 398 LSLSSTIKSNSIIMRFCSSTPKPKTSKAVGYWLLGCSGMVFTAVVLGMVSGYI 556
L +++ + +++ ++ PK K++ +L C MVF +++ GY+
Sbjct: 255 LGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM 307
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 6.6
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +2
Query: 398 LSLSSTIKSNSIIMRFCSSTPKPKTSKAVGYWLLGCSGMVFTAVVLGMVSGYI 556
L +++ + +++ ++ PK K++ +L C MVF +++ GY+
Sbjct: 255 LGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM 307
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.8 bits (44), Expect = 6.6
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = +2
Query: 398 LSLSSTIKSNSIIMRFCSSTPKPKTSKAVGYWLLGCSGMVFTAVVLGMVSGYI 556
L +++ + +++ ++ PK K++ +L C MVF +++ GY+
Sbjct: 194 LGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYM 246
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +1
Query: 325 LQQQYYFKANYHNYKN 372
L Y + NY+NY N
Sbjct: 88 LSNNYNYNNNYNNYNN 103
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 8.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 304 PGVISKWLQQQYYFKANYHNYKNAQI 381
P +IS + + NY+NY N ++
Sbjct: 301 PKIISSLSNKTIHNNNNYNNYNNKKL 326
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 8.7
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 380 YNILGRLSLSSTIKSNSIIMRFCSSTPKPKTSKAVGYWLLGC 505
Y ++G SS ++ S++P+P +S A L GC
Sbjct: 816 YLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,788
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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