Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M21
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56090.1 68418.m06998 cytochrome oxidase assembly family prot...    34   0.11 
At1g31990.1 68414.m03934 expressed protein                             29   3.0  
At3g59610.1 68416.m06651 F-box family protein / jacalin lectin f...    29   4.0  
At3g20540.1 68416.m02600 DNA-directed DNA polymerase family prot...    28   5.3  
At4g18640.1 68417.m02759 leucine-rich repeat transmembrane prote...    28   7.0  

>At5g56090.1 68418.m06998 cytochrome oxidase assembly family protein
           contains PF02628: Cytochrome oxidase assembly protein
          Length = 457

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +2

Query: 368 KTHRYNILGRLSLSSTIKSNSIIMRFCSSTPKPKTSKAVGYWLLGCSGMVFTAVVLGMVS 547
           K    ++  R+S  ++I S S        T  P+  K VG WL G +  VF+ VVLG V+
Sbjct: 61  KGQNASMFRRMSTVASISSESKEGLKLLVTGGPQAQKWVGIWLFGSAAWVFSMVVLGGVT 120


>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 194 LLRFC-LFISIPNSCTAMLNLSRLCRCKQSLS 286
           ++RFC L ++I  SC A      LC C++S+S
Sbjct: 85  IMRFCWLLVAIYLSCRAFFRRPLLCYCRRSVS 116


>At3g59610.1 68416.m06651 F-box family protein / jacalin lectin
           family protein contains Pfam profile PF01419:
           Jacalin-like lectin domain
          Length = 521

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +1

Query: 307 GVISKWLQQQYYFKANYHNYKNAQI*HPRKVKSKQHNKIKQYYNAILLFNS*TEDVKSSW 486
           G+ + WL+Q  +FK++Y  Y  + + +    + K +  +  Y     +  S TE    +W
Sbjct: 112 GICNPWLRQIRWFKSSYEGYDFSGMGYDNSRQDKHYKILGSYCTNTTMNASVTELGSDAW 171


>At3g20540.1 68416.m02600 DNA-directed DNA polymerase family protein
           similar to PolI-like DNA polymerase [Oryza sativa]
           GI:19912795; contains Pfam profiles PF01612: 3'-5'
           exonuclease, PF00476: DNA polymerase I family A
          Length = 1034

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -3

Query: 558 IIYPDTIPSTTAVKTIPLHPSSQYPTAFDVFGLG 457
           I  PD +  T  V T     +S Y TAFD FG G
Sbjct: 659 ISLPDEVVETQHVNTSVESDTSAYGTAFDAFGGG 692


>At4g18640.1 68417.m02759 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 686

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 327 KPFRDDTRSLLCTALRDCLHRQSRERFSI 241
           K F+++   ++C  +R+CL  + R+R S+
Sbjct: 620 KTFKEEELEVICDVIRECLKTEQRQRPSM 648


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,311,165
Number of Sequences: 28952
Number of extensions: 215313
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)