Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M19
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.37 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 18  QRENKNAASTNIPGRDRSGDGSSRLHHAVSRHCRSIHRND*RQHH 152
           Q+ N NAA+ N      +G      HH V+ H   +  N   +HH
Sbjct: 309 QQNNNNAATNNQNHHHHAGHHIHAQHHVVNHH---VAANGSLKHH 350


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -2

Query: 455 SWSTTALPMMPCGPDSEIWSSTRS 384
           +WST   P     P    WS T S
Sbjct: 306 TWSTVQTPTTVMSPTINCWSLTSS 329


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 276 SSRYTTAAQVAFLMHVKAIFTRRQPSDTPLNVDLPI 169
           S+  +T+  +A + +   +FT    +D P+NV L +
Sbjct: 302 STSVSTSVYLAIVFN--GLFTEEDVADVPINVTLSL 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,534
Number of Sequences: 336
Number of extensions: 3325
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)