Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M19
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 131 9e-32
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 31 0.098
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 28 1.2
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo... 26 4.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 4.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 6.4
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 25 8.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 8.5
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 8.5
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 8.5
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 131 bits (316), Expect = 9e-32
Identities = 71/150 (47%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Frame = +1
Query: 106 RAIAVLSTET-IRGNITFTQV-QDGKVHVQGGITGLPPG-EYGFHVHEKGDLSGGCVSTG 276
RA+AVL ++ + G +TF QV Q+ +V V + G + GFH+H+ GD + GC S G
Sbjct: 3 RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62
Query: 277 SHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHE 456
HFNPE K HG RHVGDLGN+ D + D ISL G + IIGR +V+H
Sbjct: 63 PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122
Query: 457 KADDYGKSDHPDSRKTGNAGGRVACGVIGI 546
DD GK +S KTGNAG R ACGVIGI
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIGI 152
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 31.5 bits (68), Expect = 0.098
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +1
Query: 316 NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 435
ND H GDLG ++ D N DDQI L G IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 514 GGRVACGVIGIL*IYKFHIYLSYLIKYIY 600
GG++ C +IG++ I F ++SYL Y +
Sbjct: 197 GGKLLCWIIGVIFIAAFIAHVSYLSFYSF 225
>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 472
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +1
Query: 85 HGFTTPSRAIAVLST 129
HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 331 HVGDLGNVVFDENHYSRIDLVDDQI 405
HV + GNV FD S + L+D ++
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 545 IPMTPQATRPPALPVFLESG 486
+P P +PPA+PV E+G
Sbjct: 673 VPEVPSVPQPPAVPVVPEAG 692
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 44 N*HSWPRSLWRRLITASPRRLAPLPFYPQKRLEATSRSPRFKMGRSTFRGVSLGCLRVNM 223
N H WPR +W + T+S L LP +K LE S + +T V L L+
Sbjct: 231 NRHFWPREIWSK-YTSSFGDLC-LPDNSEKALECLSDMTANALTHATDALVYLSQLKTQE 288
Query: 224 AF 229
F
Sbjct: 289 IF 290
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 505 GNAGGRVACGVIGIL*IYK--FHIYLSYLIKY 594
G AGG+ AC + +L I K H Y S L Y
Sbjct: 482 GGAGGQHACAIASLLNIEKIIIHKYSSVLSAY 513
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 3 FSDG-SQRENKNAASTNIPGRDRSGD 77
F DG +++ENK+ ASTN + GD
Sbjct: 38 FGDGVAKQENKSGASTNDEKKPAEGD 63
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 274 GSHFNPEHKDHGHPNDVNRHV 336
G H +P+H DH + ++R V
Sbjct: 299 GLHLDPDHWDHSEESRIDREV 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,429
Number of Sequences: 5004
Number of extensions: 51225
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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