Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M19
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 173 1e-43
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 165 3e-41
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 162 2e-40
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 61 5e-10
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 33 0.15
At5g43450.1 68418.m05312 2-oxoglutarate-dependent dioxygenase, p... 31 0.78
At3g26130.1 68416.m03260 glycosyl hydrolase family 5 protein / c... 29 3.1
At5g06020.1 68418.m00667 self-incompatibility protein-related si... 28 4.1
At3g42580.1 68416.m04420 Ulp1 protease family protein contains P... 28 4.1
At4g17410.1 68417.m02607 expressed protein 28 5.5
At3g10380.1 68416.m01244 exocyst complex component-related ident... 27 7.2
At2g37980.1 68415.m04662 expressed protein similar to axi 1 [Nic... 27 7.2
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 27 9.6
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 173 bits (420), Expect = 1e-43
Identities = 79/149 (53%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Frame = +1
Query: 103 SRAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGS 279
++ +AVL S+E + G I FTQ DG V G ++GL PG +GFHVH GD + GC+STG
Sbjct: 2 AKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 280 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 459
HFNP+ K HG P D NRH GDLGN+ ++ + + D QI L+GP+ I+GRAVV+H
Sbjct: 62 HFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHAD 121
Query: 460 ADDYGKSDHPDSRKTGNAGGRVACGVIGI 546
DD GK H S TGNAGGRVACG+IG+
Sbjct: 122 PDDLGKGGHELSLATGNAGGRVACGIIGL 150
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 165 bits (400), Expect = 3e-41
Identities = 76/148 (51%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Frame = +1
Query: 106 RAIAVLS-TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 282
+A+AVL T + G +T TQ G V ITGL PG +GFH+HE GD + GC+STG H
Sbjct: 66 KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125
Query: 283 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 462
FNP + HG P D RH GDLGN+ + + + +VD+QI L+GP+ ++GRA V+HE
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185
Query: 463 DDYGKSDHPDSRKTGNAGGRVACGVIGI 546
DD GK H S TGNAGGR+ACGVIG+
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 162 bits (393), Expect = 2e-40
Identities = 73/148 (49%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Frame = +1
Query: 106 RAIAVLSTET-IRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 282
RA+A+++ + +RG + F Q G HV G I+GL PG +GFH+H GD + GC+STG H
Sbjct: 9 RAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPH 68
Query: 283 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 462
FNP ++ HG PN+ RH GDLGN++ N + I + D I LSG + I+GRAVV+H
Sbjct: 69 FNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADP 128
Query: 463 DDYGKSDHPDSRKTGNAGGRVACGVIGI 546
DD GK H S+ TGNAG RV CG+IG+
Sbjct: 129 DDLGKGGHKLSKSTGNAGSRVGCGIIGL 156
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 61.3 bits (142), Expect = 5e-10
Identities = 40/122 (32%), Positives = 62/122 (50%)
Frame = +1
Query: 103 SRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGSH 282
S A+A I G + F QV ++ TGL PG + + ++E GDL+ G STGS
Sbjct: 96 SAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSL 155
Query: 283 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 462
+NP G +GDLG + D+N + +++ ++ +IGRAVV++ K
Sbjct: 156 YNPFQDQTG-----TEPLGDLGTLEADKNGEAFYSGKKEKLKVA---DLIGRAVVVY-KT 206
Query: 463 DD 468
DD
Sbjct: 207 DD 208
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 33.1 bits (72), Expect = 0.15
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Frame = +1
Query: 172 GKVHVQGGITGLPPGEYGFHVHEKGDLS--GGCVSTG---SHFNPEHKDHGHPNDVNRHV 336
G V + GL P + H H D + G S G NP H H H + RH
Sbjct: 139 GNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAASGGFPHGFSNPFHGGHSHMHSYQRHT 198
Query: 337 GDLGNVVFDENHYSRIDLV 393
G G ++H+ RI L+
Sbjct: 199 GRQG----QQDHHLRILLL 213
>At5g43450.1 68418.m05312 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 362
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = -1
Query: 252 QVAFLMHV-KAIFTRRQPSD-TPLNVDLPILNLGERDVAS 139
+V + HV +I + +PSD + LN+ +PI++LG+R+ +S
Sbjct: 34 EVPSMFHVPSSILSNNRPSDISGLNLTVPIIDLGDRNTSS 73
>At3g26130.1 68416.m03260 glycosyl hydrolase family 5 protein /
cellulase family protein contains Pfam profile: PF00150
cellulase (glycosyl hydrolase family 5)
Length = 551
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 59 PRSLWRRLITASPRRLAPLPF 121
PRS W +L+T++ RR P PF
Sbjct: 514 PRSQWFKLVTSTRRRSRPKPF 534
>At5g06020.1 68418.m00667 self-incompatibility protein-related
similar to self-incompatibility [Papaver rhoeas]
GI:3097260
Length = 151
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 136 IRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSG 258
IRG +T V++ ++ G + GFH+H++G+L G
Sbjct: 42 IRGPLTRITVKNNNDYLLGIHCKSKDDDLGFHIHKEGELYG 82
>At3g42580.1 68416.m04420 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 903
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 48 NIPGRDRSGDGSSRLHHAVS 107
N+PG D G+ S++ HH VS
Sbjct: 404 NVPGNDGDGEVSAKKHHTVS 423
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 142 GNITFTQVQDGKVHVQGGITGLPPGEYGFH 231
GN F Q G VQ G G+ PG GFH
Sbjct: 415 GNQYFNGFQPGFNGVQHGFNGVQPGFNGFH 444
>At3g10380.1 68416.m01244 exocyst complex component-related identical
to Probable exocyst complex component Sec8
(Swiss-Prot:Q93YU5) [Arabidopsis thaliana]; weak
similarity to Exocyst complex component Sec8 (rSec8)
(Swiss-Prot:Q62824) [Rattus norvegicus]
Length = 1053
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 24 ENKNAASTNIPGRDRSGDGSSRLHHAVS 107
E N N+PGRD D SRL +S
Sbjct: 1025 EYSNLLKVNVPGRDTPSDAQSRLLEILS 1052
>At2g37980.1 68415.m04662 expressed protein similar to axi 1
[Nicotiana tabacum] GI:559921; contains Pfam profile
PF03138: Plant protein family
Length = 638
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 100 PSRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCVSTGS 279
PS + +T T+ I+ + DG+ +QGG P S G S+GS
Sbjct: 36 PSISSDYCNTNTVNIAIS-PDIDDGETGLQGGACSSPS-------------SIGSSSSGS 81
Query: 280 HFNPEHKDHGHP 315
H++ +H H HP
Sbjct: 82 HYHHDHHYHHHP 93
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 322 VNRHVGDLGNVVFDENHYSRIDLVDDQISLSGP 420
V R GDL + V DEN+ R L+D +S + P
Sbjct: 962 VERMDGDLWDKVLDENNDYRRQLIDQVVSTALP 994
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,447,434
Number of Sequences: 28952
Number of extensions: 306162
Number of successful extensions: 818
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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