Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M17
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   2e-05
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   3.4  
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)                      27   5.9  
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +2

Query: 170 HWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 307
           +WS+KA          MRHLK+V RRF+NGF+EG +    KK VA++
Sbjct: 2   NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEGTQAKSQKKNVAAA 48


>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 819

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 113 CDMTIYHIFCITYGSYFGA 57
           CD +IYHI+ + Y  ++GA
Sbjct: 355 CDSSIYHIYRLKYAVHYGA 373


>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
          Length = 364

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 139 WISCSKITILPLVSEG*AQEDYWNWPHASF 228
           W++C K+ +LP+ ++      Y  W +  F
Sbjct: 136 WVNCDKVRLLPMRADEVGARVYARWTNGQF 165


>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 139 WISCSKITILPLVSEG*AQEDYWNWPHASF 228
           W++C K+ +LP+ ++      Y  W +  F
Sbjct: 297 WVNCDKVRLLPMRADEVGARVYARWTNGQF 326


>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +2

Query: 53  GKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXXMR-HL 229
           G  R KT    +R  R +   QK     CGY  +  RSY  S +            R + 
Sbjct: 31  GAARAKTLAEKQRRNRLATAAQKCSTFTCGYKRSYKRSYKRSYERSYKRGYERSYKRGYK 90

Query: 230 KIVRRRFRNGFKEG 271
           +   R ++ G++ G
Sbjct: 91  RSYERSYKRGYERG 104


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,458,308
Number of Sequences: 59808
Number of extensions: 194432
Number of successful extensions: 766
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)