Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M16
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   5.5  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.5  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    22   5.5  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   5.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   9.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.7  

>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 547 TCRYTASQQTNFI*WSSLCNFT 482
           +CRYTA    N     S+ N+T
Sbjct: 50  SCRYTAGLAANVTPADSMVNYT 71


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 547 TCRYTASQQTNFI*WSSLCNFT 482
           +CRYTA    N     S+ N+T
Sbjct: 109 SCRYTAGLAANVTPADSMVNYT 130


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 547 TCRYTASQQTNFI*WSSLCNFT 482
           +CRYTA    N     S+ N+T
Sbjct: 50  SCRYTAGLAANVTPADSMVNYT 71


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 547 TCRYTASQQTNFI*WSSLCNFT 482
           +CRYTA    N     S+ N+T
Sbjct: 109 SCRYTAGLAANVTPADSMVNYT 130


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 380 PDGTRRFRCKGQELYH 427
           PDGT  +   GQ++ H
Sbjct: 417 PDGTMGYMMDGQQMMH 432


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 288 TSHSATHVNSA*IRKLICARRF 353
           T+H  TH      R  +C RRF
Sbjct: 38  TAHVRTHSGEKPFRCPVCDRRF 59


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 288 TSHSATHVNSA*IRKLICARRF 353
           T+H  TH      R  +C RRF
Sbjct: 294 TAHVRTHSGEKPFRCPVCDRRF 315


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,613
Number of Sequences: 336
Number of extensions: 2952
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)