Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M16
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...   205   4e-54
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...   203   2e-53
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    28   1.5  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   2.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.5  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   6.0  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   6.0  

>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score =  205 bits (501), Expect = 4e-54
 Identities = 92/184 (50%), Positives = 114/184 (61%)
 Frame = +2

Query: 140 VCHTDAYTLSGKSPEGVFPXXXXXXXXXXXXXXXXXXXXXKPGDHVVPLYVPQCNTCKFC 319
           VCHTDAYTLSGK PEG+FP                     + GD V+ LY P+C TCKFC
Sbjct: 49  VCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFC 108

Query: 320 LNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEA 499
            + KTNLC ++R+TQG+G+MPDGT RF C G  L HFMGCSTFS+YTVV +IS+  +   
Sbjct: 109 KSGKTNLCGRIRTTQGKGLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERL 168

Query: 500 APLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFXXXXXXXXXXXXXXXXXXNRIIGVD 679
           APLD VCLLGCG+ TGYGAA  TA ++ G + A+F                   RI G+D
Sbjct: 169 APLDSVCLLGCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGID 228

Query: 680 INPD 691
           +NP+
Sbjct: 229 VNPE 232



 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +1

Query: 10  TVGXVLQCLAAVAWAAGKPLSIXALXVXPPKAGAVRVKLTATG 138
           T G ++ C AAVAW    PLSI  + V PP+   VR+K+  +G
Sbjct: 6   TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSG 48


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score =  203 bits (495), Expect = 2e-53
 Identities = 92/184 (50%), Positives = 114/184 (61%)
 Frame = +2

Query: 140 VCHTDAYTLSGKSPEGVFPXXXXXXXXXXXXXXXXXXXXXKPGDHVVPLYVPQCNTCKFC 319
           VCHTDAYTLSG  PEG FP                     +PGDHV+ LY P+C  CKFC
Sbjct: 46  VCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFC 105

Query: 320 LNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEA 499
            + KTNLC K+R TQG+G+MPDGT RF C+ + L H+MGCS+FSQYTVV +ISL  ++ +
Sbjct: 106 RSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHS 165

Query: 500 APLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFXXXXXXXXXXXXXXXXXXNRIIGVD 679
           APL  +CLLGCGV TG+GA  ++AKVE GS  A+                   +RII +D
Sbjct: 166 APLRSICLLGCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAID 225

Query: 680 INPD 691
           IN D
Sbjct: 226 INAD 229



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 23/41 (56%), Positives = 27/41 (65%)
 Frame = +1

Query: 4   MSTVGXVLQCLAAVAWAAGKPLSIXALXVXPPKAGAVRVKL 126
           MS  G  + C AAVAW A +PLSI  + V PPKA  VRVK+
Sbjct: 1   MSFEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKV 41


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 2/144 (1%)
 Frame = +2

Query: 266 GDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKG--QELYHFMGC 439
           GD VV  +   C  C FC   +   C     ++   V   G+      G  + L    GC
Sbjct: 116 GDRVVIAFDLACGQCSFCKRHEYAACDTTNDSKLMDV-NYGSHHSAIFGYTKLLGDVPGC 174

Query: 440 STFSQYTVVLEISLCKVAEAAPLDKVCLLGCGVPTGYGAALNTAKVEPGSNCAIFXXXXX 619
                     EI+ CK+ +  P D   L    V      A    +V+ G   AI+     
Sbjct: 175 QAEYIRVPFAEINCCKLPDDIP-DSEGLFMSDVLCTSLHACTLGEVKKGDTVAIWGMGPI 233

Query: 620 XXXXXXXXXXXXXNRIIGVDINPD 691
                        +++IG+++ P+
Sbjct: 234 GLYAGRWAQILGASKVIGIEVVPE 257


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 266  GDHVVPLY-VPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDGTRRFRCKGQEL 421
            G HVV L  V   N C   +  KT    KV   +   + P G+R++ C G  L
Sbjct: 1036 GKHVVRLLQVRDANGCAASIT-KTQPAAKVSVVEMASLAPLGSRQYYCVGDRL 1087


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 479  LCKVAEAAPLDKVCLLGCGVPTGY 550
            +CKV E A L   CLL C   T +
Sbjct: 979  ICKVREIASLSLTCLLDCSKMTTF 1002


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 260 KPGDHVVPLYVPQCNTCKFCLNPKTNLC 343
           KPGD V       C  C +C + + NLC
Sbjct: 84  KPGDPVAVEPGCVCRLCDYCRSGRYNLC 111


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 596 RNLILVQLWQYSRRLHNL*VHRIPANKLYLMEQPLQLYREKFLEQLC 456
           R+L  V   +   R H L +H++   K +  +Q ++  R+  L+ LC
Sbjct: 210 RDLDAVACHERIARYHILCIHQLCEKKQFSAQQEVEQLRKGILQSLC 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,825
Number of Sequences: 5004
Number of extensions: 44495
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)