Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M16
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039) 29 3.6
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 29 4.8
SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1) 28 6.3
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +1
Query: 25 LQCLAAVAWAAGKPLSIXALXVXPPKAGAVRVKLTATG 138
+ C AAVAW KPLSI + V PPKA VR+K+ ATG
Sbjct: 2 ITCQAAVAWEPKKPLSIETIEVAPPKAHEVRIKILATG 39
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +2
Query: 140 VCHTDAYTLSGKSPEGVFP 196
VCHTDAYTLSG PEG+FP
Sbjct: 40 VCHTDAYTLSGVDPEGLFP 58
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 31.5 bits (68), Expect = 0.68
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 266 GDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 388
GD VV CNTCK C + + C+K + GV +G
Sbjct: 126 GDRVVVNPNSSCNTCKACRRGQPHFCEKGGTGSAIGVWKNG 166
>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 266 GDHVVPLYVPQCNTCKFCLNPKTNLCQKVRSTQGQGVMPDG 388
GD VV + C C FCL + +LC+ G+ +G
Sbjct: 78 GDRVVINPLTSCGICDFCLKGQPHLCKVEGKNTAIGIKRNG 118
>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
Length = 566
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 132 HRXSAILTRIHSPENLLRXCFL*YWXMKAAESWXVSVRESLQSSPGT 272
H S +T +P L R C L + A+E + V ++L+S PGT
Sbjct: 370 HPYSRDITTFTAPTGLYRCCRLLFGVYMASEKFQNIVLQTLKSCPGT 416
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 260 KPGDHVVPLYVPQCNTCKFCLNPKTNLCQKV 352
K GD V C TC +C + NLC K+
Sbjct: 74 KEGDRVAIEPGTPCRTCSYCKKGRYNLCAKM 104
>SB_46556| Best HMM Match : CDtoxinA (HMM E-Value=1.1)
Length = 208
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = -3
Query: 466 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 299
+ CV + T HE V F S T S H +T L ++FR CV
Sbjct: 52 HECVTSRSITLHECVTFRSITLHERMTFRSITLHECVTFRSITLHECVTFRSITLHECVT 111
Query: 298 LWDV 287
W +
Sbjct: 112 FWSI 115
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = -3
Query: 466 NNCVLTEC*TTHEMVEFLSFTAES----PSAIWHHTLTLSRTNLLAQISFRIQAEFTCVA 299
+ CV T HE V F S T S H +T L +++FR CV
Sbjct: 107 HECVTFWSITLHECVTFWSITLHECVTFRSITLHECVTFRNITLHERVTFRSITLHECVT 166
Query: 298 LWDV 287
W +
Sbjct: 167 FWSI 170
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 380 PDGTRRFRCKGQELYHFMGCSTFSQYTVVLEISLCKVAEAAPLDKVCL-LG----CGVPT 544
PDG R++C Y C+T+ I+ C + A P D+VC+ G CG P
Sbjct: 878 PDG--RYKCTCTSRYKDENCTTY--------INECANSSACPADRVCINYGGGYLCGCPA 927
Query: 545 GY 550
G+
Sbjct: 928 GF 929
>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1298
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 429 KW*SSCPLQRNRLVPSGITP*P*VERTFWHKLVFGFKQNLHVLHCGTYRGTTWSPGLTEV 250
+W + + LV I P P + L FG+ NL+ GTY TW P + V
Sbjct: 1070 RWLDKGTISASELVAGCILPLPYLSYRLLRHL-FGYSHNLN----GTYTDATWKPSVERV 1124
>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 906
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = -1
Query: 597 AQFDPGSTLAVFKAAP*PVGTPHPSKQT--LSNGAASATLQREISRT 463
++ +PGST ++ ++ P +P+P+K + L G +S+T+ + +S T
Sbjct: 446 SEVEPGSTSSITGSSKYPPVSPNPAKPSNILFEGPSSSTVFKSLSPT 492
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,967,854
Number of Sequences: 59808
Number of extensions: 389219
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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