Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M15
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116...    30   1.9  
05_01_0209 - 1556715-1556778,1558392-1558585                           29   5.7  
08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007           28   7.5  
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910...    28   7.5  

>05_06_0106 -
           25611239-25611295,25611388-25611477,25611582-25611669,
           25611757-25611836,25611968-25612120,25612403-25612546,
           25612633-25612884,25612985-25613116,25613207-25613287,
           25613368-25613488,25613930-25614025,25614195-25614298,
           25614481-25614567,25614690-25614803,25614871-25614930,
           25615007-25615102,25615316-25615366,25615457-25615562,
           25615642-25615713,25616117-25616172,25616446-25616508,
           25616636-25616764
          Length = 743

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/81 (28%), Positives = 39/81 (48%)
 Frame = +1

Query: 361 VIERVVSAALVPLIPLALMMPNKLFDSLLAILITAHSFWGLEAIAVDYVRASIFGPILPK 540
           VI   + AALVP++    +M ++ F S L  +I       L  +A+ Y    +  P L K
Sbjct: 250 VILGTLLAALVPVVGFNAVMTSEHFASFLVFII-------LHVVALVYYIKGLLTPRLFK 302

Query: 541 IAIGLVYLISIATLGGLFYII 603
           +A+ LV  + +A    +  I+
Sbjct: 303 VAMTLVITVGLAVCFAVIAIL 323


>05_01_0209 - 1556715-1556778,1558392-1558585
          Length = 85

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +3

Query: 120 TMAFSMXSSYIRMPKSNVHSTSYEASDPASNNTTYDLQLIAC*KY 254
           T ++SM S+  R   + VH  +   S+P+S++TT+ +++I   +Y
Sbjct: 5   TTSYSMTSAVRRSNPTEVHLPT--RSEPSSSSTTWSIEIIQASRY 47


>08_01_0400 - 3538570-3540363,3540895-3541639,3543688-3544007
          Length = 952

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 396 WDQCSRNHSLNDPEPGVVLDLLR*PAHARR 307
           W + S NH   D   G+VL LL  P+HAR+
Sbjct: 338 WIEQSENHRKGD-HAGIVLVLLNHPSHARQ 366


>03_03_0226 +
           15590276-15590469,15590515-15590539,15590865-15591014,
           15591166-15591594
          Length = 265

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +3

Query: 117 ITMAFSMXSSYIRMPKSNVHSTSYEASDPASNNTTYDLQLIAC*KY 254
           +T ++SM  S  R   + VH  +   S+P+S++TT+ +++I   +Y
Sbjct: 4   LTTSYSMTLSVRRSNPTEVHLPT--RSEPSSSSTTWSIEIIQASRY 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,070,425
Number of Sequences: 37544
Number of extensions: 427471
Number of successful extensions: 816
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)