Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M13
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyc...    54   1e-08
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    29   0.75 
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    28   1.3  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    26   4.0  

>SPAC25B8.07c |||hypoxia induced family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 26/71 (36%), Positives = 37/71 (52%)
 Frame = +3

Query: 294 ASHHVETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRILAQG 473
           AS    +  EK    F  NPF+PLGCL T G      +  R     ++ + MR R+++QG
Sbjct: 20  ASEESLSRSEKLKYVFVRNPFIPLGCLMTVGTFLASGYYIRRENHLMANKFMRYRVMSQG 79

Query: 474 LTIAALVIGVV 506
            T+AAL   V+
Sbjct: 80  FTLAALAFSVL 90


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 246 PEPTDLHWVQLRKEMGASHHVETT-REKFHRKFTENPFVPL 365
           P P +    +L+  +G   H + T ++KF   FT +PFV L
Sbjct: 378 PPPRESEAWRLKSLVGVLRHADRTPKQKFKFSFTSDPFVKL 418


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 635 ISNHLLTCTIISLKKNIYLLSFLISLI 555
           I N+ L  T+ISLK+N++L  F ++ +
Sbjct: 16  IDNNYLVTTLISLKENVFLHIFTLTFL 42


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 327 IFLLSFLHDEKLPFPCAVAPNVNPLVLVQLTFSSF 223
           ++L++ +    L  PCA+APN+  L++V+     F
Sbjct: 169 VYLVTLMIYIVLQIPCALAPNIACLLIVRFFCGCF 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,047
Number of Sequences: 5004
Number of extensions: 45194
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)