Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M13
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   2e-16
SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)               54   7e-08
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_16257| Best HMM Match : rve (HMM E-Value=1.1e-13)                   27   9.7  
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)                  27   9.7  

>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 40/70 (57%), Positives = 46/70 (65%)
 Frame = +3

Query: 309  ETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRILAQGLTIAA 488
            ETT+EKF RK  ENPFVP+GC  T  AL  GL SF+ G   + Q MMR R++AQG TI A
Sbjct: 3092 ETTKEKFARKVKENPFVPIGCALTVSALVYGLLSFKRGDVGMQQTMMRARVVAQGSTIVA 3151

Query: 489  LVIGVVITTG 518
            LV G   T G
Sbjct: 3152 LVGGCFATAG 3161



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +3

Query: 366  GCLATAGALSMGLWSFRTGKTRLSQQMMRVRILAQGLTIAALVIGVVIT 512
            GC ATAGAL  GL SF+ G  ++ QQMMR R+LAQG T+ A++ G+  T
Sbjct: 3155 GCFATAGALVYGLLSFKRGNQKVQQQMMRARVLAQGSTLIAVIGGLGYT 3203


>SB_48284| Best HMM Match : HIG_1_N (HMM E-Value=5.6e-25)
          Length = 103

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = +3

Query: 273 QLRKEMGASHHVETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFR-TGKTRLSQQMM 449
           QL +        ET  EK  RK    PF+P+G L T  A+  G+ ++R  G    S+ +M
Sbjct: 9   QLSESWQTREERETETEKLIRKSKAQPFIPIGILGTTAAIVWGVIAYRHRGPMSTSRYIM 68

Query: 450 RVRILAQGLTIAALVIGVVIT 512
           R+R++AQ   + ++++G+ IT
Sbjct: 69  RLRVIAQSCVVGSIMVGMGIT 89


>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 188 CDSMCYNLVLY*NYIVMLKYDHSSVYYVFITLVNCEAFFC 69
           CD +  +++LY  Y  M       V+++F+ +VNC+A FC
Sbjct: 61  CDLLVGHILLYRIYFGMF------VFFLFMAVVNCQASFC 94


>SB_33010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 320 RKIS*KIYRESVCSSRLFSNSWSFIHGSLEF*NWKDKTLSANDESENSCT 469
           R+I  ++ RES C + +   SW+ I  ++   N  D +  A   +  +C+
Sbjct: 31  REIKREVRRESTCLTPIIFCSWTIIQNNVVIRNQSDPSSPATSTTTITCS 80


>SB_16257| Best HMM Match : rve (HMM E-Value=1.1e-13)
          Length = 353

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 264 HWVQLRKEMGASHHVETTREKFHRKFTENPF 356
           HWV++R+     H  +   E FHR   +  F
Sbjct: 265 HWVEVRRAEPGHHRSQAFAESFHRWLAQRLF 295


>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
          Length = 1384

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 515 CGDYYTNN*SSNGKPLCKNSHSHHLLRESCLSSSKTPKTHG 393
           CG+ + ++  S+ KP C N   HH   +S        K HG
Sbjct: 761 CGNRFKHHGGSHSKPYCGNRFKHHGGSDSKSYCGNRFKHHG 801



 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 515 CGDYYTNN*SSNGKPLCKNSHSHHLLRESCLSSSKTP 405
           CG+ + ++  S+ KP C N   HH+      + + TP
Sbjct: 809 CGNRFRHHGGSDSKPYCGNRFRHHVTPTLNYTVAATP 845


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,221
Number of Sequences: 59808
Number of extensions: 315911
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)