Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M13
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-3|CAA92488.1|  144|Caenorhabditis elegans Hypothetical pr...    51   8e-07
AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    29   3.7  

>Z68220-3|CAA92488.1|  144|Caenorhabditis elegans Hypothetical
           protein T20D3.6 protein.
          Length = 144

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 29/76 (38%), Positives = 41/76 (53%)
 Frame = +3

Query: 282 KEMGASHHVETTREKFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQQMMRVRI 461
           ++M      +T      +K   NP VPLG LAT G L   + +     +R +Q  MR R+
Sbjct: 33  QDMSGGSRGQTASTTALQKALNNPLVPLGMLATTGCLIGMMVATLRRSSRGAQYFMRGRV 92

Query: 462 LAQGLTIAALVIGVVI 509
           +AQG T+AALV G V+
Sbjct: 93  VAQGFTVAALVGGAVM 108


>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 426 TRLSQQMMRVRILAQGLTIAALVIGVVITTGKSSK*YSIILHFY*RY 566
           T+ SQ  + +RI A G+ +  L+ GV+IT  K  K ++I  HF  RY
Sbjct: 326 TQFSQNAL-IRI-ALGVELKLLIWGVIITLCKVCKQHTIKSHFNIRY 370


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,250
Number of Sequences: 27780
Number of extensions: 253771
Number of successful extensions: 542
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)