Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M13
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            25   0.82 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.8  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.6  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 223 KRRKCQLNQNQRIYIGCNCARK 288
           KRRK  LNQNQ +    +C+ K
Sbjct: 9   KRRKKNLNQNQMMIWALDCSIK 30


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 318  LSFLHDEKLPFPCAVAPNV 262
            L  +H+E  P P A+ P V
Sbjct: 1100 LVMIHEENAPLPPALPPQV 1118


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 324 KFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQ 440
           K+ R++ +N F+P  CL     L   L S R GK   S+
Sbjct: 115 KYLRRYEDNIFLPEDCLLFTIELDRVLESPR-GKYEFSK 152


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 324 KFHRKFTENPFVPLGCLATAGALSMGLWSFRTGKTRLSQ 440
           K+ R++ +N F+P  CL     L   L S R GK   S+
Sbjct: 130 KYLRRYEDNIFLPEDCLLFTIELDRVLESPR-GKYEFSK 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,542
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)