Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M12
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    32   0.005
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.47 

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 31.9 bits (69), Expect = 0.005
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 7/155 (4%)
 Frame = +3

Query: 225 QNSSTIAPVTEPTQXLVNYEALKYIVGRPFNLNCTLAVPLDSFEIVWKKNSVPLGEVAGL 404
           ++  T+  VT P +  +  +      GRP    C       +FE        P+  ++ L
Sbjct: 316 ESVETVLTVTAPLKAKIEPQVQTIDFGRPATFTC-------NFE------GNPIKTISWL 362

Query: 405 KERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTGHIKAWM---VTGNVHAKMTKDA-- 569
           K+ + + +     +I+    ED  G Y C ++N     +A     + G       + A  
Sbjct: 363 KDGHPIDHNEAVLRIESVRKEDK-GMYQCFIRNDQESAEATAELKLGGRFEPPQIRHAFN 421

Query: 570 --NVVEGQNIKITCKLIGKPYSEVTWKYKKDELDN 668
              V  G ++ + C   G P  E+TW+     L N
Sbjct: 422 EETVQPGNSVFLKCIASGNPTPEITWELYGRRLSN 456



 Score = 30.3 bits (65), Expect = 0.016
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +3

Query: 468 DDYGNYTCGLKNQTG--HIKAWM-VTGNVHAKMTKDANVVE-GQNIKITCKLIGKPYSEV 635
           +D G Y C + N  G   ++  + VT  + AK+      ++ G+    TC   G P   +
Sbjct: 300 EDSGKYLCVVNNSVGGESVETVLTVTAPLKAKIEPQVQTIDFGRPATFTCNFEGNPIKTI 359

Query: 636 TWKYKKDELDNGTDV 680
           +W      +D+   V
Sbjct: 360 SWLKDGHPIDHNEAV 374



 Score = 26.2 bits (55), Expect = 0.27
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +3

Query: 477 GNYTCGLKNQTGHIKAWMVTG--NVHAKMT---KDANVVEGQNIKITCKLIGKPYSEVTW 641
           GNYTC L + +  +  +  +   NV  +      D    +G +  + CK  G P   VTW
Sbjct: 674 GNYTC-LASNSASVTTYTTSLFINVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTW 732

Query: 642 K 644
           K
Sbjct: 733 K 733



 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
 Frame = +3

Query: 468 DDYGNYTCGLKNQTG---HIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 638
           +D G Y C   ++ G   H     V G    +  +   +V G  + + C   G P   V 
Sbjct: 484 NDGGLYRCVASSKVGSADHSARINVYGLPFVRSMEKQAIVAGGTLIVHCPFAGHPVDSVV 543

Query: 639 WK 644
           W+
Sbjct: 544 WE 545


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 688 TALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFCPSTTLASLVILAC 545
           +AL SV +  S  L  H T E+ LP+ L  +   CP   L  +  L C
Sbjct: 345 SALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECPEVRLNIISNLDC 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,204
Number of Sequences: 336
Number of extensions: 2507
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)