Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M12
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835...    31   1.2  
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239...    30   2.1  
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335...    29   2.8  
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151...    29   3.7  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    29   3.7  
02_02_0716 - 13264983-13265195,13265219-13265968,13266307-132664...    28   6.5  
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759...    28   6.5  

>07_03_1770 -
           29382508-29382591,29382901-29383041,29383134-29383520,
           29383685-29383930,29385396-29385437,29385973-29386461
          Length = 462

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 356 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 484
           DR  E   A  R GR Q   + PE  A LP+  P  + RLR L
Sbjct: 29  DRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLL 71


>12_01_0314 -
           2395113-2395760,2396151-2396738,2397218-2397252,
           2397546-2397632,2397913-2397985,2398648-2398714,
           2398795-2398931,2400196-2400217,2400733-2400807,
           2402281-2402365,2402605-2403334
          Length = 848

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -1

Query: 376 LFFFHTISNESSGTARVQFKLNGRPTMYFKAS*LTSXWVGSVTGAIVDEFWALVRTPQAK 197
           L   HT+ ++ + T  V F++     + +K+    + W+G   G I D +W   R+P+ +
Sbjct: 343 LLLLHTMHSKVAATTHVSFRVVHFQDLVYKSFGEIAVWLGGQYG-IHDSWWDCGRSPKGR 401


>03_02_0691 +
           10432615-10433109,10433155-10433216,10433526-10433565,
           10434562-10434807,10435020-10435189,10435323-10435539,
           10435615-10435755,10435943-10436026
          Length = 484

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/43 (41%), Positives = 20/43 (46%)
 Frame = +2

Query: 356 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 484
           DR  E   A  R GR Q   + PE  A LP   P  + RLR L
Sbjct: 31  DRKFEPPAAPSRVGRKQRKQKGPEAAARLPAVAPLSKCRLRLL 73


>08_02_0855 -
           21913291-21913347,21914117-21914211,21915077-21915165,
           21915449-21915507,21917872-21918160,21918307-21918398,
           21918495-21918621,21918730-21918811,21919265-21919541,
           21919647-21919812,21920519-21920847
          Length = 553

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 715 FSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFC 584
           FS    +P+  LTS        +Y+H +S YGL + L   +  C
Sbjct: 439 FSIDDTMPNPLLTSEKFIPIPIVYYHCSSSYGLSLRLLAQVNLC 482


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = +3

Query: 414 YELQNKGLTFQIKGRSNE------DDYGNYTCGLKNQTGHIKAW 527
           Y  + +GL F+I+   +E      D +G +T  +K +  H+KAW
Sbjct: 608 YVKKIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAW 651


>02_02_0716 -
           13264983-13265195,13265219-13265968,13266307-13266463,
           13266542-13266582
          Length = 386

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 641 EVQEGRVGQRHGRERGAGQSRAAGE 715
           E Q   VG  HGR+RG G+ +  G+
Sbjct: 269 EAQANVVGNSHGRKRGHGEKKGKGK 293


>01_07_0189 +
           41875088-41875149,41875322-41875392,41875809-41875902,
           41876285-41876360,41877130-41877293,41877428-41877605,
           41877687-41877809,41877895-41877990,41878091-41878372
          Length = 381

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 329 SRRATGFV*DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQ 451
           +RR  G    R++     +++GG PQG V   E+  HL +Q
Sbjct: 20  ARRICGMA-SRIDANDHGNQQGGNPQGPVGTAERLEHLLNQ 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,218
Number of Sequences: 37544
Number of extensions: 296103
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)