Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M12
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74120.1 68414.m08584 mitochondrial transcription termination...    29   3.1  
At1g63530.1 68414.m07182 hypothetical protein                          29   4.1  
At3g30710.1 68416.m03897 hypothetical protein similar to Arginin...    28   7.2  
At2g39970.1 68415.m04911 peroxisomal membrane protein (PMP36) id...    28   7.2  
At3g04350.1 68416.m00460 expressed protein                             27   9.5  
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative...    27   9.5  

>At1g74120.1 68414.m08584 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 445

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +3

Query: 345 DSFEIVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDY 476
           D+F++VWK+  V L E+  ++++ E     + F I   ++  +Y
Sbjct: 301 DAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCLADVPEY 344


>At1g63530.1 68414.m07182 hypothetical protein
          Length = 499

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 579 EGQNIKITCKLIGKPYSEVTWKYKKDELDNGT 674
           EGQNI      + K + E+ W+Y K E   G+
Sbjct: 279 EGQNISSFKPYVDKSHDELRWEYYKKEAKGGS 310


>At3g30710.1 68416.m03897 hypothetical protein similar to
           Arginine-tRNA-protein transferase 1 (EC
           2.3.2.8)(R-transferase 1) (Arginyltransferase 1)
           (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus
           musculus}; similar to MRP homologs in mycobacteria
           (SP:P53382), which belong to the MR?/NBP35 family of
           ATP-binding proteins.
          Length = 523

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 465 EDDYG--NYTCGLKNQTGHIKAWMVTGNVHAKMTKDANVVEGQNIKITCKLIGKPYSEVT 638
           ED+ G  N  C +K Q   +    V   V A    D  V EG+ I IT KLI   Y  ++
Sbjct: 420 EDEAGLANLLCHIKGQNYQVPG--VKNMVEAATYADMVVKEGREIAITNKLIALYYQHLS 477


>At2g39970.1 68415.m04911 peroxisomal membrane protein (PMP36)
           identical to 36kDa-peroxisomal membrane protein (PMP36)
           GI:15146342 from [Arabidopsis thaliana]
          Length = 331

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -1

Query: 409 SLRPATSPRGTLFFFHTI-SNESSGTARVQFKLN-GRPTMYFKAS*LTSXWVGSVTGAIV 236
           SL    + +G  ++F+ +  N +  TA  + K   G  ++   AS L + + GSV   + 
Sbjct: 70  SLAGTAASQGVYYYFYQVFRNRAEATALARKKKGLGDGSVGMFASLLVAAFAGSVNVLMT 129

Query: 235 DEFWALVRTPQAKNRRDK 182
           +  W +V   Q   +  K
Sbjct: 130 NPIWVIVTRMQTHRKMTK 147


>At3g04350.1 68416.m00460 expressed protein
          Length = 567

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 658 SSFLYFHVTSEYGLPINLQVILMFCPSTTLASLVILACTFPVT 530
           SS LY HV    G      V+ +FCP    A+L I   T P+T
Sbjct: 345 SSELYVHVKPALGGTFTDIVMWIFCPFNGPATLKIGLFTLPMT 387


>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
          Length = 671

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 359 RMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRL 475
           + +++Q+  R GG  +GA+  P+Q + +  Q    RGR+
Sbjct: 492 QQQQQQQQQRPGGGRRGALPQPQQPSPMMQQQMHPRGRM 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,926
Number of Sequences: 28952
Number of extensions: 230003
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)