Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M10
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...   140   1e-34
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    29   0.71 
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    28   1.2  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    27   2.9  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   6.6  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  

>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score =  140 bits (340), Expect = 1e-34
 Identities = 60/138 (43%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
 Frame = +1

Query: 115 VGNHAIWSLSSCKPGFGIDQLSXDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYK 294
           +GN A W+ SS K GF I  +  D ++TYWQSDG  PH ++I+F K+  + ++ +Y  Y 
Sbjct: 26  IGNLAQWTCSSEKSGFPIRLVRDDNIDTYWQSDGSQPHTIHIKFVKRVSIKYVSMYLQYT 85

Query: 295 LDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDI-HDRPIRTYMIQIAVLS 471
           LDESYTPS + I AGT F DL+ +  +++ EP+GW  +P+ D   +  +  ++IQI +L+
Sbjct: 86  LDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHVPVGDFGRNGLLDVHLIQIKILA 145

Query: 472 NHQNGRDTHMRQIKVHSP 525
           NHQ+G+D+H+R IK+++P
Sbjct: 146 NHQSGKDSHVRLIKIYAP 163


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 253 KTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSG 396
           K  ++HI  Y DY +   +   + S+R   HF+  Q+  +I L E +G
Sbjct: 274 KEKLTHIIKYDDYLVHLVHETLQYSVRLEQHFHYTQDPLIIFLFEQNG 321


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 349 NDLQEIEVIELIEPSGWEMIPIKDIHD 429
           +D +EI+  E+ E S WEMI  +D  D
Sbjct: 692 DDFEEIDTDEIEEQSDWEMISNQDASD 718


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 493 THMRQIKVHSPCEPTSFD--INKFRNFSTVQFQQYATIR*YNLLLPVER 633
           T  + + V  P EP S +  +N F  FST +   +A  + Y+LLL  E+
Sbjct: 424 TPRQLLNVKRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQ 472


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 436 IRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFDINK 555
           I T +I  AVLS+H       + + KV   C+P S  + K
Sbjct: 260 IETLLINEAVLSSHLPKIAETLTEAKVTLKCDPASLKVLK 299


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 238 IQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTH--FNDLQEIEV 372
           I  Q+K   S IY+ T     ++YTP+R   + G+   FN +   +V
Sbjct: 439 ISLQQKEYNSRIYVDTVADQSQTYTPTRRFTKQGSQGDFNAIHSRKV 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,682
Number of Sequences: 5004
Number of extensions: 63834
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)