Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_M10
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.) 175 2e-44
SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051) 38 0.007
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 28 9.4
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088) 28 9.4
>SB_6165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 175 bits (427), Expect = 2e-44
Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Frame = +1
Query: 94 SSGTVRAVGNHAIWSLSSCKPGFGIDQLSXDCMETYWQSDGQLPHLVNIQFQKKTMVSHI 273
++G +R +G+ A W G + ETYWQSDG PHL+NIQF++KT + I
Sbjct: 65 NNGKLREIGDQAAWLWYRAAEGCNL--------ETYWQSDGPQPHLINIQFKRKTAIQKI 116
Query: 274 YIYTDYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMI 453
IY DYK DESYTPS+IS+RAG F+DL +IE+I+L EP+GW + + + DRPIRTYM+
Sbjct: 117 SIYADYKADESYTPSKISVRAGNSFHDLHQIELIQLDEPTGWLTVSLNE-GDRPIRTYML 175
Query: 454 QIAVLSNHQNGRDTHMRQIKVHSP-CEPTSFDINKFRNFSTVQFQQYATIR 603
Q+AVL+NHQNGRDTHMRQIK+ +P C+ + D+ F++V Y+ +R
Sbjct: 176 QVAVLANHQNGRDTHMRQIKIFAPLCDAVNPDM---PTFTSVDCAMYSCVR 223
>SB_57610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 504
Score = 44.4 bits (100), Expect = 1e-04
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Frame = +1
Query: 196 TYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGT--HFNDLQEI 366
TYW+SDG Q H V + + ++ +YI D + D++Y P RI I G HF L E+
Sbjct: 184 TYWESDGNQGRHWVRLSIKPGVIIKRLYIELDAR-DDNYMPYRIIISGGEVGHFKQLNEV 242
Query: 367 EVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHS 522
V + +G ++ + + ++I+I + +G DT + IK+ S
Sbjct: 243 FVD--LTVTGDVLV----LEEMTQYFHIIEIKIKECKDDGIDTRIHGIKIVS 288
>SB_29103| Best HMM Match : APC10 (HMM E-Value=0.00051)
Length = 717
Score = 38.3 bits (85), Expect = 0.007
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Frame = +1
Query: 196 TYWQSDGQL-PHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAG---THFNDLQE 363
+YWQSDG H V ++ + ++ + I D+SY P + + AG TH ++ +
Sbjct: 107 SYWQSDGPARSHWVRLRMRPNVVLKLLSINVA-SADQSYMPQHVVVMAGRDETHLREIAD 165
Query: 364 IEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIK 513
+ + + K+ + + QI + H +G DT +R +K
Sbjct: 166 VRIPRYLHNFTQSYPTHKEF---TFNSRLFQINIKRCHSDGCDTRIRGLK 212
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 37.9 bits (84), Expect = 0.009
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +1
Query: 184 DCMETYWQSDG-QLPHLVNIQFQKKTMVSHIYIYTDYKLDESYTPSRISIRAGTHFNDLQ 360
D E+YWQS G Q H + ++ ++ + + D D SY PS + I G + L+
Sbjct: 1280 DGTESYWQSSGPQGKHWIRLELFPDLLIHRLCMTVD-PSDSSYMPSLVVISGGDTVSRLK 1338
Query: 361 EIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTS 540
+I+ + + S ++ + + + P I+I++ +G D + + + + +
Sbjct: 1339 DIKTVHI--GSSDSLVTL--LEEAPEEYRYIEISIRQCKSSGIDCKVHGLTISARPKADE 1394
Query: 541 FDINKFRNFSTVQFQQYAT 597
D+ +F + Q AT
Sbjct: 1395 DDVAASFSFLALDDDQDAT 1413
>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 163 GIDQLSXDCMETYWQSDGQLPHLVNI-----QFQKKTMVSHIYIYTDYKL 297
G D+L + D LPH V++ QF KKT +S +Y Y Y+L
Sbjct: 247 GEDRLLLHVDPNRYHLDLDLPHNVDVETCGAQFNKKTKMSDLYFYLTYEL 296
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 340 THFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKV 516
T ND + E+IEL E + + + +I+DR Y +QIA L N + + Q+++
Sbjct: 1863 TKENDTLQKEIIELREENISQKSKLYEINDR----YELQIAELKNDNEIKQDKIEQLEI 1917
>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
Length = 866
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 421 IHDRPIRTYMIQIAVLSNHQNGRDTHMRQIKV 516
IHDRP +Y +IA +S+H RQ+++
Sbjct: 671 IHDRPSHSYAKEIANISSHVKSGTPLTRQLRL 702
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,745,627
Number of Sequences: 59808
Number of extensions: 433709
Number of successful extensions: 1004
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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