Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M10
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical ...   154   6e-38
Z73972-5|CAA98261.2|  201|Caenorhabditis elegans Hypothetical pr...    95   5e-20
Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical
           protein Y48G1C.12 protein.
          Length = 210

 Score =  154 bits (374), Expect = 6e-38
 Identities = 65/137 (47%), Positives = 93/137 (67%)
 Frame = +1

Query: 115 VGNHAIWSLSSCKPGFGIDQLSXDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDYK 294
           + + AIW+LSSCK GFGID+L  D +E YWQSDG  PH + ++FQKKT V+ +  Y D+K
Sbjct: 27  ISSQAIWALSSCKSGFGIDELLSDSVEKYWQSDGPQPHTILLEFQKKTDVAMMMFYLDFK 86

Query: 295 LDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSN 474
            DESYTPS+I ++ G+   D+   +     EP GW  I ++D + +P R + +Q+ V+ N
Sbjct: 87  NDESYTPSKIQVKMGSSHQDIFFRQTQTFNEPQGWTFIDLRDKNGKPNRVFWLQVQVIQN 146

Query: 475 HQNGRDTHMRQIKVHSP 525
           HQNGRDTH+R ++V  P
Sbjct: 147 HQNGRDTHIRHVRVLGP 163


>Z73972-5|CAA98261.2|  201|Caenorhabditis elegans Hypothetical
           protein F15H10.3 protein.
          Length = 201

 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 47/140 (33%), Positives = 71/140 (50%)
 Frame = +1

Query: 106 VRAVGNHAIWSLSSCKPGFGIDQLSXDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYT 285
           +R +   A  SLSS     G+D+L  +  E  W+++   PH     F KKT +S++ ++ 
Sbjct: 22  LRDITEEARISLSSVAHCGGVDELLHESSELAWRTNMSPPHRALFTFSKKTDISYVMLFL 81

Query: 286 DYKLDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAV 465
           DY  DESY P  + I  G   ND        + +P GW  IPI D    P+R   +Q+ +
Sbjct: 82  DYSRDESYCPQEVRIDLGDGTNDWWLKMYRRVDQPKGWVKIPIHDAFGNPLRVMSLQMTI 141

Query: 466 LSNHQNGRDTHMRQIKVHSP 525
           + NH+ GRD  +R  +V  P
Sbjct: 142 MKNHEKGRDCVVRHFRVLGP 161


>Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical
           protein T02D1.4 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = -2

Query: 642 RIHSFNRQK*IILSYSGILLELNS*KISKLIYIKRGRFTW*MHFDLSHMCITTILMITQN 463
           +IH+F      I+   G+LL + +  + KL+ +KR  F    HF     C+T I +IT  
Sbjct: 259 KIHTFANLLFAIVVPMGLLLFMAASILWKLV-LKRSDFV--SHFTAEKRCVTRITLITTG 315

Query: 462 CYL 454
             L
Sbjct: 316 LQL 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,727,642
Number of Sequences: 27780
Number of extensions: 355516
Number of successful extensions: 785
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)