Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M09
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)                  29   3.9  
SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_50778| Best HMM Match : PA14 (HMM E-Value=0.00025)
          Length = 1266

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +1

Query: 142  NV*IKMPQSPSATSXRIWE*ITHKSFCWPTNSQW*YSPSTKINYYYNCSQKPKHWCWFWR 321
            NV +K  + P+  S  I+     KSFC+P N QW  + + KI        + +    F  
Sbjct: 1015 NVTVKGEERPAVLSQYIFG--DSKSFCYPENLQW--NRTAKIALIITLRNQGRWMAHFLD 1070

Query: 322  NVEVLY 339
            N++ +Y
Sbjct: 1071 NLQDIY 1076


>SB_8210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1935

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 540  QTHTYHILS*TNNKLLKVTTCYITY*GLN 454
            +T   HI   ++  LL+V  CY  Y GLN
Sbjct: 1159 KTKNLHIFDLSSQHLLRVVECYDAYFGLN 1187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,996,229
Number of Sequences: 59808
Number of extensions: 278555
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)