Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_M09
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60460.1 68418.m07583 sec61beta family protein similar to SP|...    38   0.004
At3g60540.2 68416.m06772 sec61beta family protein similar to SP|...    37   0.012
At3g60540.1 68416.m06771 sec61beta family protein similar to SP|...    37   0.012
At2g45070.1 68415.m05610 sec61beta family protein similar to SP|...    35   0.036
At4g39450.1 68417.m05582 expressed protein                             28   4.2  
At4g10180.1 68417.m01668 light-mediated development protein 1 / ...    28   4.2  

>At5g60460.1 68418.m07583 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 109

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +2

Query: 311 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 436
           GS  M RFYTDD+            MSL FI  V  LH++GK
Sbjct: 58  GSSNMLRFYTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGK 99


>At3g60540.2 68416.m06772 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 311 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 436
           G+G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 33  GAGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At3g60540.1 68416.m06771 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 81

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 311 GSGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 436
           G+G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 33  GAGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 74


>At2g45070.1 68415.m05610 sec61beta family protein similar to
           SP|P52870 Protein transport protein SEC61 beta 1 subunit
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF03911: Sec61beta family
          Length = 82

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 314 SGGMWRFYTDDSXXXXXXXXXXXXMSLLFIASVFMLHIWGK 436
           +G M +FYTDD+            MS+ FIA V +LH+ GK
Sbjct: 37  AGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGK 77


>At4g39450.1 68417.m05582 expressed protein
          Length = 1553

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 346 FSWSQSGA-SSCFSDVSPVYCIGI 414
           FSWS     +SCF DVSP+ C+ I
Sbjct: 397 FSWSILALIASCFPDVSPLSCLTI 420


>At4g10180.1 68417.m01668 light-mediated development protein 1 /
           deetiolated1 (DET1) identical to Light-mediated
           development protein DET1 (Deetiolated1)
           (Swiss-Prot:P48732) [Arabidopsis thaliana]
          Length = 543

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 222 AEAFVGDLLPDPXRGSTRRLRHFYSNVVKLYFKSDI 115
           A  F   +   P   S  R RHFY N+V  Y   D+
Sbjct: 9   ARVFERQIRTPPPGASVNRARHFYENLVPSYTLYDV 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,132,334
Number of Sequences: 28952
Number of extensions: 197133
Number of successful extensions: 320
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)